Detailed information NTG1042502

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: AB9L16_RS18630
• Genome accession: NZ_CP168138
• Coordinates: 4126944..4129178 (-)
• Length: 744 a.a.
• NCBI ID: WP_375122530.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LW8
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4121944..4134178

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB9L16_RS18595 (AB9L16_18595)	murB	4122322..4123341 (-)	1020	WP_375122528.1	UDP-N-acetylmuramate dehydrogenase	-
AB9L16_RS18600 (AB9L16_18600)	-	4123338..4123802 (-)	465	WP_076563814.1	low molecular weight protein-tyrosine-phosphatase	-
AB9L16_RS18605 (AB9L16_18605)	kdsB	4123802..4124566 (-)	765	WP_375122529.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AB9L16_RS18610 (AB9L16_18610)	-	4124563..4124748 (-)	186	WP_003179363.1	Trm112 family protein	-
AB9L16_RS18615 (AB9L16_18615)	lpxK	4124772..4125782 (-)	1011	WP_252876730.1	tetraacyldisaccharide 4'-kinase	-
AB9L16_RS18620 (AB9L16_18620)	-	4125782..4126210 (-)	429	WP_041479458.1	biopolymer transporter ExbD	-
AB9L16_RS18625 (AB9L16_18625)	exbB	4126207..4126842 (-)	636	WP_016771007.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
AB9L16_RS18630 (AB9L16_18630)	comA	4126944..4129178 (-)	2235	WP_375122530.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
AB9L16_RS18635 (AB9L16_18635)	-	4129315..4129833 (+)	519	WP_039760200.1	DUF2062 domain-containing protein	-
AB9L16_RS18640 (AB9L16_18640)	-	4129973..4130752 (-)	780	WP_056788203.1	ABC transporter permease	-
AB9L16_RS18645 (AB9L16_18645)	-	4130749..4131681 (-)	933	WP_041479460.1	ABC transporter ATP-binding protein	-
AB9L16_RS18650 (AB9L16_18650)	-	4131815..4132438 (-)	624	WP_095181610.1	glutathione S-transferase family protein	-
AB9L16_RS18655 (AB9L16_18655)	-	4132482..4133141 (-)	660	WP_041479462.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81930.10 Da
• Isoelectric Point: 9.7679

>NTDB_id=1042502 AB9L16_RS18630 WP_375122530.1 4126944..4129178(-) (comA) [Pseudomonas sp. LW8]
MRTGMMALAVGLLAPVFLPALPPVGWLLVLPMVALMLLPFRSFPLAFLLFGFTWACVGAQWALNDRLPPSLDGETRWLEG
RVVGLPQHSDGVVRFELADARSRHEKLPSLLRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPHAFDYEAWLLAQRIGATG
TIKDGLRLAEARHAWRDGVRQRLLAVDAQGREGALAALVLGDGSGLSREDWQVLQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGIWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLFDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPWWALVLGSLGAILLLLPRGVPMRPLGWPLLLLLA
LPPQERIEEGRADVWQIDVGQGLAIFVRTRHHALLYDAGPRFGEFDLGERVVLPALRKLNVQALDLMLLSHADADHAGGA
RAVMRGLNVHRVVSGDPPNLPPELNAEACASGEQWQWDGVQFQLWQWSAADDSNQRSCVLQIEANGERLLLTGDIDIHAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKALQPESVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEQGAIHLQL
GSFKPPWTMRQQRRFWRDPPVPGR

Nucleotide

• Length: 2235 bp

>NTDB_id=1042502 AB9L16_RS18630 WP_375122530.1 4126944..4129178(-) (comA) [Pseudomonas sp. LW8]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGTTGGTT
GCTGGTGCTGCCAATGGTGGCGCTGATGTTGCTGCCGTTTCGCAGCTTTCCACTGGCATTTTTGCTGTTTGGCTTTACCT
GGGCCTGCGTTGGCGCGCAGTGGGCGCTAAATGACCGCTTGCCACCGAGCTTGGACGGCGAAACCCGTTGGCTTGAAGGG
CGCGTGGTCGGCTTACCGCAGCACAGCGATGGCGTGGTGCGTTTCGAGCTGGCTGATGCGCGCTCACGCCACGAAAAACT
GCCATCGCTGCTGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGTTGA
AGCGCCCGGGTGGCCTGCTCAACCCGCACGCCTTCGACTACGAGGCCTGGCTGCTCGCGCAACGGATCGGCGCAACCGGC
ACGATCAAGGATGGCCTGCGCCTGGCTGAGGCCCGGCATGCATGGCGCGACGGCGTTCGCCAACGCCTGCTGGCGGTGGA
TGCGCAAGGACGCGAGGGCGCGCTGGCAGCGCTGGTGCTCGGTGATGGCTCTGGGCTCAGTCGCGAGGATTGGCAGGTAC
TGCAAGACACCGGCACCGTGCATCTGCTGGTGATCTCCGGCCAGCACATCGGTTTGCTCGCCGCAGTGATGTATCTGCTG
GTTGCCGGGCTGGCGCGTTTCGGAATCTGGCCGTTGCGCTGGCCCTGGTTGCCGTGGGCGTGTGGCCTGGCATTCGCGGC
GGCGCTGGGTTACGGCTTGCTCGCCGGGTTCGATGTGCCGGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTATTGTTGT
GGCGCCTGCGTTTTCGCCATCTCGGCGCGTGGTGGCCGTTATTGCTGGCGTTCAATGGCGTGCTGTTGTTCGATCCGCTG
GCCAGTTTGCGTCCAGGTTTCTGGCTGTCCTTCGCGGCCGTTGCAGTACTGATTTTCACCTTCGGCGGGCGGCTTGGGGC
CTGGCGCTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCGATCGGCTTGTGTCCGGTGTTGCTGGCGCTGAGCT
TGCCCATCAGCGTCAGCGGGCCTGTAGCCAATCTGCTGGCCGTTCCGTGGGTCAGCCTCGTGGTGCTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAAGGGCTATTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCGGCCGCCATTCCATGGTGGGCGTTGGTCCTGGGCA
GCCTTGGCGCGATTTTATTGCTGTTGCCCCGTGGCGTGCCAATGCGTCCGTTGGGCTGGCCGCTGCTGTTGCTCTTGGCA
CTGCCGCCTCAAGAGCGAATAGAGGAAGGGCGAGCCGATGTCTGGCAAATCGACGTCGGCCAAGGCTTGGCGATTTTTGT
GCGCACGCGACATCACGCATTGCTCTATGACGCCGGCCCGCGTTTCGGCGAGTTCGATCTCGGCGAACGAGTGGTGTTGC
CAGCGTTACGCAAACTCAATGTGCAAGCGCTCGACTTGATGCTACTCAGCCACGCTGACGCCGATCACGCTGGCGGCGCC
CGGGCGGTCATGCGTGGATTGAACGTGCACCGCGTGGTCAGCGGCGATCCGCCAAACCTGCCGCCGGAGCTGAACGCCGA
AGCCTGCGCAAGTGGCGAACAGTGGCAGTGGGATGGCGTGCAGTTCCAGCTCTGGCAATGGTCGGCGGCCGATGACAGCA
ACCAGCGCTCCTGTGTATTGCAGATCGAAGCCAACGGTGAACGCCTGCTGCTCACCGGCGACATCGACATTCACGCCGAG
CGCGTTCTGCTCGACAGCCCACTGGCCGTGCCGACGCAGTGGCTGCAATCGCCACATCACGGCAGTCGCAGTTCATCGTC
GATGGCGCTGTTGAAAGCCTTGCAGCCGGAATCAGTGCTGATCTCCCGTGGCCACGGCAACTCCTTCGGTCATCCGCATC
CCACCGTGCTGGCGCGCTACCGCAAGCAAGGTCTGCGCATCTACGACAGCGCCGAACAAGGTGCCATTCATTTGCAACTG
GGCAGCTTCAAGCCGCCGTGGACGATGCGGCAACAGCGACGTTTCTGGCGCGATCCGCCGGTCCCGGGCCGTTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (20-165)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.143	96.64	0.61
comA	Ralstonia pseudosolanacearum GMI1000	35.604	100	0.372