Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AB9L16_RS18625 Genome accession   NZ_CP168138
Coordinates   4126207..4126842 (-) Length   211 a.a.
NCBI ID   WP_016771007.1    Uniprot ID   A0AAU7ERB8
Organism   Pseudomonas sp. LW8     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4121207..4131842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L16_RS18590 (AB9L16_18590) - 4121602..4122072 (-) 471 WP_016771000.1 (2Fe-2S)-binding protein -
  AB9L16_RS18595 (AB9L16_18595) murB 4122322..4123341 (-) 1020 WP_375122528.1 UDP-N-acetylmuramate dehydrogenase -
  AB9L16_RS18600 (AB9L16_18600) - 4123338..4123802 (-) 465 WP_076563814.1 low molecular weight protein-tyrosine-phosphatase -
  AB9L16_RS18605 (AB9L16_18605) kdsB 4123802..4124566 (-) 765 WP_375122529.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB9L16_RS18610 (AB9L16_18610) - 4124563..4124748 (-) 186 WP_003179363.1 Trm112 family protein -
  AB9L16_RS18615 (AB9L16_18615) lpxK 4124772..4125782 (-) 1011 WP_252876730.1 tetraacyldisaccharide 4'-kinase -
  AB9L16_RS18620 (AB9L16_18620) - 4125782..4126210 (-) 429 WP_041479458.1 biopolymer transporter ExbD -
  AB9L16_RS18625 (AB9L16_18625) exbB 4126207..4126842 (-) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB9L16_RS18630 (AB9L16_18630) comA 4126944..4129178 (-) 2235 WP_375122530.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB9L16_RS18635 (AB9L16_18635) - 4129315..4129833 (+) 519 WP_039760200.1 DUF2062 domain-containing protein -
  AB9L16_RS18640 (AB9L16_18640) - 4129973..4130752 (-) 780 WP_056788203.1 ABC transporter permease -
  AB9L16_RS18645 (AB9L16_18645) - 4130749..4131681 (-) 933 WP_041479460.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=1042501 AB9L16_RS18625 WP_016771007.1 4126207..4126842(-) (exbB) [Pseudomonas sp. LW8]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1042501 AB9L16_RS18625 WP_016771007.1 4126207..4126842(-) (exbB) [Pseudomonas sp. LW8]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACACTACGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAGTTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCTGCTGCGCGGGTCATTCATGAACTCGAACGCTACAT
CAACGCCCTCGGCACCATCGCGGCCATGGCGCCATTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGTTCCGGCATGACCACCAATGCTTCGGTACTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCA
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGCTTCCTGCAACGTCGTATCGACGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment