Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACDZ29_RS00890 Genome accession   NZ_CP168135
Coordinates   159687..159995 (-) Length   102 a.a.
NCBI ID   WP_375091078.1    Uniprot ID   -
Organism   Peribacillus sp. RS7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 154687..164995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDZ29_RS00855 (ACDZ29_00850) - 155283..156971 (+) 1689 WP_289325718.1 DEAD/DEAH box helicase -
  ACDZ29_RS00860 (ACDZ29_00855) - 156949..157746 (+) 798 WP_289325719.1 YqhG family protein -
  ACDZ29_RS00865 (ACDZ29_00860) - 157792..157977 (-) 186 WP_289315683.1 YqzE family protein -
  ACDZ29_RS00870 (ACDZ29_00865) comGG 158105..158491 (-) 387 WP_375089514.1 competence type IV pilus minor pilin ComGG -
  ACDZ29_RS00875 (ACDZ29_00870) comGF 158484..158963 (-) 480 WP_289334753.1 competence type IV pilus minor pilin ComGF -
  ACDZ29_RS00880 (ACDZ29_00875) - 158911..159249 (-) 339 WP_375089516.1 hypothetical protein -
  ACDZ29_RS00885 (ACDZ29_00880) comGD 159236..159694 (-) 459 WP_289315679.1 competence type IV pilus minor pilin ComGD -
  ACDZ29_RS00890 (ACDZ29_00885) comGC 159687..159995 (-) 309 WP_375091078.1 competence type IV pilus major pilin ComGC Machinery gene
  ACDZ29_RS00895 (ACDZ29_00890) comGB 160085..161137 (-) 1053 WP_289334751.1 competence type IV pilus assembly protein ComGB -
  ACDZ29_RS00900 (ACDZ29_00895) comGA 161103..162179 (-) 1077 WP_375091079.1 competence type IV pilus ATPase ComGA Machinery gene
  ACDZ29_RS00905 (ACDZ29_00900) - 162286..162666 (-) 381 WP_370015789.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ACDZ29_RS00910 (ACDZ29_00905) - 162881..163582 (+) 702 WP_375089518.1 helix-turn-helix transcriptional regulator -
  ACDZ29_RS00915 (ACDZ29_00910) - 163668..163910 (+) 243 WP_289315675.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11214.13 Da        Isoelectric Point: 5.0502

>NTDB_id=1042440 ACDZ29_RS00890 WP_375091078.1 159687..159995(-) (comGC) [Peribacillus sp. RS7]
MKKVMNERGFTLIEMLIVLLVISILLIITIPNITKNQSTIQSKGCEAFVKMAQAQVQAYEIDNAKLPVSINELESQGYLK
QTSCPNGDDISLDSKGKITVGE

Nucleotide


Download         Length: 309 bp        

>NTDB_id=1042440 ACDZ29_RS00890 WP_375091078.1 159687..159995(-) (comGC) [Peribacillus sp. RS7]
ATGAAGAAAGTGATGAATGAACGAGGTTTTACACTAATTGAGATGCTCATTGTTTTACTTGTAATATCCATTCTTTTGAT
TATTACAATACCCAATATCACGAAGAACCAATCGACAATCCAGTCTAAAGGGTGTGAAGCATTCGTGAAGATGGCTCAAG
CACAGGTTCAGGCATATGAGATCGACAATGCTAAACTGCCCGTAAGTATCAATGAATTGGAAAGCCAAGGCTATCTCAAA
CAGACATCCTGTCCTAATGGGGATGATATTAGTTTGGATAGCAAAGGAAAGATAACGGTCGGTGAGTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

56.322

85.294

0.48
  comGC Staphylococcus aureus MW2

47.191

87.255

0.412
  comGC Staphylococcus aureus N315

47.191

87.255

0.412

Multiple sequence alignment