Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACDZ07_RS01600 Genome accession   NZ_CP168012
Coordinates   358954..359457 (+) Length   167 a.a.
NCBI ID   WP_420173078.1    Uniprot ID   -
Organism   Staphylococcus aureus strain sa230905_barcode06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 353954..364457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDZ07_RS01570 (ACDZ07_01570) - 354894..355739 (+) 846 WP_001557587.1 ParB/RepB/Spo0J family partition protein -
  ACDZ07_RS01575 (ACDZ07_01575) - 355893..356774 (+) 882 WP_031875799.1 mechanosensitive ion channel family protein -
  ACDZ07_RS01580 (ACDZ07_01580) - 356804..357007 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  ACDZ07_RS01585 (ACDZ07_01585) ychF 357019..358116 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  ACDZ07_RS01590 (ACDZ07_01590) - 358202..358393 (-) 192 WP_001052484.1 hypothetical protein -
  ACDZ07_RS01595 (ACDZ07_01595) rpsF 358637..358933 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  ACDZ07_RS01600 (ACDZ07_01600) ssbA 358954..359457 (+) 504 WP_420173078.1 single-stranded DNA-binding protein Machinery gene
  ACDZ07_RS01605 (ACDZ07_01605) rpsR 359509..359751 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  ACDZ07_RS01610 (ACDZ07_01610) - 360028..360966 (-) 939 WP_001817700.1 Abi family protein -
  ACDZ07_RS01615 (ACDZ07_01615) - 361005..361718 (-) 714 Protein_320 tyrosine-type recombinase/integrase -
  ACDZ07_RS01620 (ACDZ07_01620) selX 361924..362535 (+) 612 WP_000475325.1 staphylococcal enterotoxin-like toxin X -
  ACDZ07_RS01625 (ACDZ07_01625) - 362904..363272 (+) 369 WP_000849163.1 YxeA family protein -
  ACDZ07_RS01630 (ACDZ07_01630) - 363453..364025 (+) 573 WP_031845196.1 PepSY domain-containing protein -
  ACDZ07_RS01635 (ACDZ07_01635) - 364162..364425 (-) 264 WP_001055897.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18525.09 Da        Isoelectric Point: 4.7305

>NTDB_id=1041142 ACDZ07_RS01600 WP_420173078.1 358954..359457(+) (ssbA) [Staphylococcus aureus strain sa230905_barcode06]
MLNRVVLVGRLTKDPEYRSTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1041142 ACDZ07_RS01600 WP_420173078.1 358954..359457(+) (ssbA) [Staphylococcus aureus strain sa230905_barcode06]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAAGCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371

Multiple sequence alignment