Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACDH76_RS16530 Genome accession   NZ_CP168000
Coordinates   3779157..3780611 (+) Length   484 a.a.
NCBI ID   WP_372357657.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. cassiae strain NCPPB 645     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3774157..3785611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDH76_RS16510 (ACDH76_16510) - 3774461..3774805 (-) 345 WP_008577787.1 ribbon-helix-helix domain-containing protein -
  ACDH76_RS16515 (ACDH76_16515) sucD 3774976..3775851 (-) 876 WP_029820064.1 succinate--CoA ligase subunit alpha -
  ACDH76_RS16520 (ACDH76_16520) sucC 3775876..3777045 (-) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  ACDH76_RS16525 (ACDH76_16525) - 3777277..3778890 (+) 1614 WP_218490629.1 PAS domain-containing sensor histidine kinase -
  ACDH76_RS16530 (ACDH76_16530) pilR 3779157..3780611 (+) 1455 WP_372357657.1 sigma-54-dependent transcriptional regulator Regulator
  ACDH76_RS16535 (ACDH76_16535) pilB 3781915..3783651 (-) 1737 WP_277575597.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACDH76_RS16540 (ACDH76_16540) - 3783748..3784395 (-) 648 WP_277573648.1 methionine biosynthesis protein MetW -
  ACDH76_RS16545 (ACDH76_16545) - 3784388..3785416 (-) 1029 WP_372162906.1 glycosyltransferase -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52477.24 Da        Isoelectric Point: 6.8288

>NTDB_id=1041072 ACDH76_RS16530 WP_372357657.1 3779157..3780611(+) (pilR) [Xanthomonas axonopodis pv. cassiae strain NCPPB 645]
MGRDLIDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAVPNGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGMD

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=1041072 ACDH76_RS16530 WP_372357657.1 3779157..3780611(+) (pilR) [Xanthomonas axonopodis pv. cassiae strain NCPPB 645]
GTGGGCCGCGACCTGATCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCTTGCGCATCAGCACCG
CGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGACCGACATGCGGTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACACCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGATCGTCCCGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTAATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGACGCATTGAATCACTACGGCT
TCCCAGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCCGTCCCCAACGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
CGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAACTGGAGCGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGCTGCGTTATAAGTTGAAGAAG
CTGGGGATGGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

95.661

0.605
  pilR Acinetobacter baumannii strain A118

49.353

95.868

0.473

Multiple sequence alignment