Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACDW35_RS25295 | Genome accession | NZ_CP167983 |
| Coordinates | 5444654..5445526 (+) | Length | 290 a.a. |
| NCBI ID | WP_003141356.1 | Uniprot ID | A0A0H2ZGZ1 |
| Organism | Pseudomonas aeruginosa strain 0102d1_7 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5439654..5450526
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACDW35_RS25265 (ACDW35_25265) | - | 5439712..5439954 (+) | 243 | WP_023109353.1 | hypothetical protein | - |
| ACDW35_RS25275 (ACDW35_25275) | - | 5440197..5440895 (-) | 699 | WP_016254081.1 | hypothetical protein | - |
| ACDW35_RS25280 (ACDW35_25280) | - | 5440959..5441498 (-) | 540 | WP_003141352.1 | pilin | - |
| ACDW35_RS25285 (ACDW35_25285) | pilB | 5441727..5443430 (+) | 1704 | WP_003141354.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACDW35_RS25290 (ACDW35_25290) | pilC | 5443434..5444651 (+) | 1218 | WP_016254080.1 | type II secretion system F family protein | Machinery gene |
| ACDW35_RS25295 (ACDW35_25295) | pilD | 5444654..5445526 (+) | 873 | WP_003141356.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| ACDW35_RS25300 (ACDW35_25300) | coaE | 5445523..5446134 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| ACDW35_RS25305 (ACDW35_25305) | yacG | 5446131..5446331 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| ACDW35_RS25310 (ACDW35_25310) | - | 5446368..5446577 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| ACDW35_RS25315 (ACDW35_25315) | - | 5446683..5447372 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| ACDW35_RS25320 (ACDW35_25320) | - | 5447369..5447839 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| ACDW35_RS25325 (ACDW35_25325) | - | 5447836..5448261 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| ACDW35_RS25330 (ACDW35_25330) | - | 5448394..5449023 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| ACDW35_RS25335 (ACDW35_25335) | - | 5449020..5449469 (+) | 450 | WP_003141357.1 | MOSC domain-containing protein | - |
| ACDW35_RS25340 (ACDW35_25340) | - | 5449495..5449665 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31813.85 Da Isoelectric Point: 7.7068
>NTDB_id=1040757 ACDW35_RS25295 WP_003141356.1 5444654..5445526(+) (pilD) [Pseudomonas aeruginosa strain 0102d1_7]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLGDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLGDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=1040757 ACDW35_RS25295 WP_003141356.1 5444654..5445526(+) (pilD) [Pseudomonas aeruginosa strain 0102d1_7]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAATGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCTGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGGCGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAATGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCTGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGGCGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.017 |
99.655 |
0.548 |
| pilD | Vibrio campbellii strain DS40M4 |
53.497 |
98.621 |
0.528 |
| pilD | Acinetobacter nosocomialis M2 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |