Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   KJP59_RS15605 Genome accession   NZ_OX419570
Coordinates   2987089..2988093 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis isolate NRS6134     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 2982089..2993093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP59_RS15580 (NRS6134_15475) acuA 2983016..2983648 (+) 633 WP_003229296.1 acetoin utilization protein acetyltransferase AcuA -
  KJP59_RS15585 (NRS6134_15480) acuB 2983675..2984319 (+) 645 WP_003229294.1 acetoin utilization AcuB family protein -
  KJP59_RS15590 (NRS6134_15485) acuC 2984316..2985479 (+) 1164 WP_004398517.1 acetoin utilization protein AcuC -
  KJP59_RS15595 (NRS6134_15490) motS 2985490..2986218 (-) 729 WP_003229290.1 flagellar motor protein MotS -
  KJP59_RS15600 (NRS6134_15495) motP 2986208..2987026 (-) 819 WP_004398692.1 flagellar motor protein MotP -
  KJP59_RS15605 (NRS6134_15500) ccpA 2987089..2988093 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  KJP59_RS15610 (NRS6134_15505) aroX 2988369..2989445 (-) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  KJP59_RS15615 (NRS6134_15510) ytxJ 2989681..2990007 (-) 327 WP_003229280.1 bacillithiol system redox-active protein YtxJ -
  KJP59_RS15620 (NRS6134_15515) ytxH 2990031..2990486 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  KJP59_RS15625 (NRS6134_15520) ytxG 2990517..2990939 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  KJP59_RS15630 (NRS6134_15525) murC 2991101..2992399 (-) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=1040499 KJP59_RS15605 WP_003229285.1 2987089..2988093(-) (ccpA) [Bacillus subtilis isolate NRS6134]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1040499 KJP59_RS15605 WP_003229285.1 2987089..2988093(-) (ccpA) [Bacillus subtilis isolate NRS6134]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCTCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATCGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTTAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503


Multiple sequence alignment