Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   KJP55_RS16365 Genome accession   NZ_OX419569
Coordinates   3089482..3090486 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis isolate NRS6118     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 3084482..3095486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP55_RS16340 (NRS6118_16205) acuA 3085409..3086041 (+) 633 WP_003229296.1 acetoin utilization protein acetyltransferase AcuA -
  KJP55_RS16345 (NRS6118_16210) acuB 3086068..3086712 (+) 645 WP_003229294.1 acetoin utilization AcuB family protein -
  KJP55_RS16350 (NRS6118_16215) acuC 3086709..3087872 (+) 1164 WP_004398517.1 acetoin utilization protein AcuC -
  KJP55_RS16355 (NRS6118_16220) motS 3087883..3088611 (-) 729 WP_003229290.1 flagellar motor protein MotS -
  KJP55_RS16360 (NRS6118_16225) motP 3088601..3089419 (-) 819 WP_004398692.1 flagellar motor protein MotP -
  KJP55_RS16365 (NRS6118_16230) ccpA 3089482..3090486 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  KJP55_RS16370 (NRS6118_16235) aroX 3090762..3091838 (-) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  KJP55_RS16375 (NRS6118_16240) ytxJ 3092074..3092400 (-) 327 WP_003229280.1 bacillithiol system redox-active protein YtxJ -
  KJP55_RS16380 (NRS6118_16245) ytxH 3092424..3092879 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  KJP55_RS16385 (NRS6118_16250) ytxG 3092910..3093332 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  KJP55_RS16390 (NRS6118_16255) murC 3093494..3094792 (-) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=1040342 KJP55_RS16365 WP_003229285.1 3089482..3090486(-) (ccpA) [Bacillus subtilis isolate NRS6118]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1040342 KJP55_RS16365 WP_003229285.1 3089482..3090486(-) (ccpA) [Bacillus subtilis isolate NRS6118]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCTCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATCGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTTAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503


Multiple sequence alignment