Detailed information NTG1040179

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: ACDW34_RS16080
• Genome accession: NZ_CP167896
• Coordinates: 3298042..3298476 (-)
• Length: 144 a.a.
• NCBI ID: WP_372403631.1
• Uniprot ID: -
• Organism: Acinetobacter piscicola strain p38
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3293042..3303476

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACDW34_RS16040 (ACDW34_16040)	rplS	3293397..3293768 (-)	372	WP_174493840.1	50S ribosomal protein L19	-
ACDW34_RS16045 (ACDW34_16045)	trmD	3293941..3294690 (-)	750	WP_180046332.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACDW34_RS16050 (ACDW34_16050)	rimM	3294732..3295280 (-)	549	WP_286433499.1	ribosome maturation factor RimM	-
ACDW34_RS16055 (ACDW34_16055)	rpsP	3295309..3295566 (-)	258	WP_004826436.1	30S ribosomal protein S16	-
ACDW34_RS16060 (ACDW34_16060)	-	3295713..3296102 (-)	390	WP_372405213.1	type IV pilin protein	-
ACDW34_RS16065 (ACDW34_16065)	comE	3296138..3296650 (-)	513	WP_372403630.1	type IV pilin protein	Machinery gene
ACDW34_RS16070 (ACDW34_16070)	-	3296652..3297496 (-)	845	Protein_3126	hypothetical protein	-
ACDW34_RS16075 (ACDW34_16075)	-	3297552..3298061 (-)	510	WP_218946376.1	type IV pilin protein	-
ACDW34_RS16080 (ACDW34_16080)	comE	3298042..3298476 (-)	435	WP_372403631.1	type IV pilin protein	Machinery gene
ACDW34_RS16085 (ACDW34_16085)	-	3298484..3302146 (-)	3663	WP_372403632.1	pilus assembly protein	-
ACDW34_RS16090 (ACDW34_16090)	-	3302200..3303009 (-)	810	WP_180047653.1	pilus assembly protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16089.51 Da
• Isoelectric Point: 8.4212

>NTDB_id=1040179 ACDW34_RS16080 WP_372403631.1 3298042..3298476(-) (comE) [Acinetobacter piscicola strain p38]
MNLKNGFTLIELMIVVVMIAVLAAIAYPSYQQYILRSNASLAEAEMQRIAQDLERYKSRNFSYRLYTPISINVGDPLKYT
ITVQATATTNLATDGSAWVMKAVPQDVKNFTYLFNNQGIRCKNKVASKVTFTDCGAIADGSEDW

Nucleotide

• Length: 435 bp

>NTDB_id=1040179 ACDW34_RS16080 WP_372403631.1 3298042..3298476(-) (comE) [Acinetobacter piscicola strain p38]
ATGAATTTAAAAAATGGTTTTACACTTATTGAGTTGATGATTGTGGTCGTTATGATTGCAGTACTTGCTGCAATTGCTTA
CCCAAGTTATCAGCAATACATACTCAGAAGCAATGCTTCATTGGCTGAGGCGGAAATGCAACGCATAGCCCAGGATTTGG
AACGTTATAAATCTAGAAATTTTAGCTACAGATTGTATACCCCTATTTCAATAAATGTTGGAGATCCACTTAAATATACA
ATTACTGTTCAAGCAACAGCGACCACCAATTTAGCCACAGATGGTTCTGCATGGGTAATGAAAGCTGTTCCACAAGATGT
GAAAAATTTCACATATTTATTTAATAATCAGGGTATTAGGTGTAAAAATAAGGTGGCGTCTAAAGTAACATTTACAGATT
GTGGGGCAATAGCAGATGGAAGTGAAGATTGGTAA

Domains

Predicted by InterproScan.

• Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS) (28-107)

• Prokaryotic N-terminal methylation motif (N_methyl) (1-27)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Acinetobacter baylyi ADP1	44.643	100	0.521
pilY2	Acinetobacter baumannii D1279779	39.61	100	0.424
pilE	Acinetobacter baumannii D1279779	38.621	100	0.389
comF	Acinetobacter baylyi ADP1	40	90.278	0.361