Detailed information NTG1040178

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: ACDW34_RS16065
• Genome accession: NZ_CP167896
• Coordinates: 3296138..3296650 (-)
• Length: 170 a.a.
• NCBI ID: WP_372403630.1
• Uniprot ID: -
• Organism: Acinetobacter piscicola strain p38
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3291138..3301650

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACDW34_RS16030 (ACDW34_16030)	-	3291288..3292313 (+)	1026	WP_372403628.1	lipase secretion chaperone	-
ACDW34_RS16035 (ACDW34_16035)	-	3292367..3293326 (+)	960	WP_372403629.1	lipase family alpha/beta hydrolase	-
ACDW34_RS16040 (ACDW34_16040)	rplS	3293397..3293768 (-)	372	WP_174493840.1	50S ribosomal protein L19	-
ACDW34_RS16045 (ACDW34_16045)	trmD	3293941..3294690 (-)	750	WP_180046332.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACDW34_RS16050 (ACDW34_16050)	rimM	3294732..3295280 (-)	549	WP_286433499.1	ribosome maturation factor RimM	-
ACDW34_RS16055 (ACDW34_16055)	rpsP	3295309..3295566 (-)	258	WP_004826436.1	30S ribosomal protein S16	-
ACDW34_RS16060 (ACDW34_16060)	-	3295713..3296102 (-)	390	WP_372405213.1	type IV pilin protein	-
ACDW34_RS16065 (ACDW34_16065)	comE	3296138..3296650 (-)	513	WP_372403630.1	type IV pilin protein	Machinery gene
ACDW34_RS16070 (ACDW34_16070)	-	3296652..3297496 (-)	845	Protein_3126	hypothetical protein	-
ACDW34_RS16075 (ACDW34_16075)	-	3297552..3298061 (-)	510	WP_218946376.1	type IV pilin protein	-
ACDW34_RS16080 (ACDW34_16080)	comE	3298042..3298476 (-)	435	WP_372403631.1	type IV pilin protein	Machinery gene

Sequence

Protein

• Length: 170 a.a.
• Molecular weight: 18866.25 Da
• Isoelectric Point: 6.4544

>NTDB_id=1040178 ACDW34_RS16065 WP_372403630.1 3296138..3296650(-) (comE) [Acinetobacter piscicola strain p38]
MKNDSVGQTSQTRFNQGFTLIELMVVVVIIAILAAIAIPSYQHFVRRANVAQAQQEMQKIAEQLERYKARNFSFKGFNAN
YLYPSNSVFDVSSQTLNLNSKYTITLVDSMTGNPLLTDSSSSGQGWSIKAISQDPANYSLLLTSAGVHCKNITQKNMDYD
SCGDAGFEEW

Nucleotide

• Length: 513 bp

>NTDB_id=1040178 ACDW34_RS16065 WP_372403630.1 3296138..3296650(-) (comE) [Acinetobacter piscicola strain p38]
ATGAAAAATGATTCTGTTGGACAAACTTCTCAAACTAGATTCAATCAAGGTTTTACCTTGATTGAACTCATGGTTGTCGT
TGTCATTATTGCTATTTTGGCAGCCATTGCGATCCCAAGTTATCAGCATTTTGTAAGGCGCGCCAATGTTGCTCAAGCGC
AACAAGAAATGCAGAAAATTGCAGAGCAATTAGAGCGTTATAAGGCTCGGAATTTTAGTTTTAAAGGGTTTAATGCCAAT
TATCTGTACCCAAGTAACTCTGTATTTGATGTGTCATCACAAACTTTAAATTTAAACTCAAAATATACGATTACTTTGGT
CGATAGTATGACTGGAAATCCACTGTTGACAGACTCGTCTTCAAGTGGGCAAGGCTGGTCAATTAAAGCCATAAGCCAAG
ATCCTGCGAATTACTCATTATTATTAACCAGTGCAGGTGTACATTGTAAAAATATCACACAGAAAAATATGGACTATGAC
TCGTGTGGTGATGCAGGTTTTGAGGAGTGGTAA

Domains

Predicted by InterproScan.

• Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS) (39-133)

• Prokaryotic N-terminal methylation motif (N_methyl) (15-37)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Acinetobacter baylyi ADP1	60.606	97.059	0.588
pilY2	Acinetobacter baumannii D1279779	45.695	88.824	0.406