Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AB8613_RS10150 Genome accession   NZ_CP167894
Coordinates   2239764..2240396 (-) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio sp. BS-M-Sm-2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2234764..2245396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8613_RS10135 (AB8613_10135) astA 2236014..2237033 (+) 1020 WP_123285401.1 arginine N-succinyltransferase -
  AB8613_RS10140 (AB8613_10140) astD 2237073..2238530 (+) 1458 WP_285953314.1 succinylglutamate-semialdehyde dehydrogenase -
  AB8613_RS10145 (AB8613_10145) - 2238795..2239586 (+) 792 WP_136974328.1 DUF1338 domain-containing protein -
  AB8613_RS10150 (AB8613_10150) crp 2239764..2240396 (-) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  AB8613_RS10155 (AB8613_10155) - 2240636..2241505 (-) 870 WP_010435210.1 phosphoribulokinase -
  AB8613_RS10160 (AB8613_10160) - 2241583..2241795 (-) 213 WP_146492442.1 YheU family protein -
  AB8613_RS10165 (AB8613_10165) - 2241925..2242917 (-) 993 WP_146492443.1 hydrolase -
  AB8613_RS10170 (AB8613_10170) - 2243193..2243663 (-) 471 WP_048605369.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=1040123 AB8613_RS10150 WP_004729651.1 2239764..2240396(-) (crp) [Vibrio sp. BS-M-Sm-2]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1040123 AB8613_RS10150 WP_004729651.1 2239764..2240396(-) (crp) [Vibrio sp. BS-M-Sm-2]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTTGGCTTGTTCGAAGAAGAC
CAAGAGCGTACTGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCTGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGATATCCTAATGCGCCTTTCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTTGGTCGTAT
CTTGAAGATGCTTGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment