Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACDK45_RS00535 Genome accession   NZ_CP167879
Coordinates   100113..100910 (-) Length   265 a.a.
NCBI ID   WP_011272050.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NTHi52     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 95113..105910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDK45_RS00505 (ACDK45_00505) nfuA 95959..96555 (-) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  ACDK45_RS00510 (ACDK45_00510) - 96631..97317 (-) 687 WP_011272045.1 ComF family protein -
  ACDK45_RS00515 (ACDK45_00515) comE 97330..98667 (-) 1338 WP_011272046.1 type IV pilus secretin PilQ Machinery gene
  ACDK45_RS00520 (ACDK45_00520) comD 98677..99090 (-) 414 WP_011272047.1 pilus assembly protein PilP Machinery gene
  ACDK45_RS00525 (ACDK45_00525) comC 99087..99608 (-) 522 WP_011272048.1 competence protein ComC Machinery gene
  ACDK45_RS00530 (ACDK45_00530) comB 99605..100112 (-) 508 Protein_103 competence protein ComB -
  ACDK45_RS00535 (ACDK45_00535) comA 100113..100910 (-) 798 WP_011272050.1 pilus assembly protein PilM Machinery gene
  ACDK45_RS00540 (ACDK45_00540) - 101009..103604 (+) 2596 Protein_105 penicillin-binding protein 1A -
  ACDK45_RS00545 (ACDK45_00545) - 103677..104522 (+) 846 WP_011272052.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  ACDK45_RS00550 (ACDK45_00550) - 104691..105020 (+) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  ACDK45_RS00555 (ACDK45_00555) recR 105151..105753 (+) 603 WP_005626527.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31392.66 Da        Isoelectric Point: 6.2334

>NTDB_id=1040075 ACDK45_RS00535 WP_011272050.1 100113..100910(-) (comA) [Haemophilus influenzae strain NTHi52]
MQFSLKNYRTLQIGIHRKQGYFDFVWFDDLEQPQSYQIFVNDRDFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPISLNELWFDYRSTSLKQGFRLDVTAIRKSTAQTYLQDFQPFKINVLDVASNAILRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLPENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=1040075 ACDK45_RS00535 WP_011272050.1 100113..100910(-) (comA) [Haemophilus influenzae strain NTHi52]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAACAGCCACAAAGTTATCAAATTTTTGTTAATGATCGTGATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTACAGTTTGTGGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTCTTT
AAATGAATTATGGTTTGATTATCGTTCTACCTCGTTAAAGCAAGGTTTTCGATTAGACGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCGTCAAATGCTATTTTGCGTGCA
TTTCAGTATTTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGTTTGGCGAT
CTGTGAAAGATCGCAGCAATCGCAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACCCGAAAACTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCGCTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

100

100

1
  comA Haemophilus influenzae Rd KW20

96.226

100

0.962

Multiple sequence alignment