Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | ACDK45_RS00520 | Genome accession | NZ_CP167879 |
| Coordinates | 98677..99090 (-) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q4QNA9 |
| Organism | Haemophilus influenzae strain NTHi52 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 93677..104090
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACDK45_RS00490 (ACDK45_00490) | - | 94059..94331 (-) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
| ACDK45_RS00495 (ACDK45_00495) | - | 94471..95061 (-) | 591 | WP_005686892.1 | YjaG family protein | - |
| ACDK45_RS00500 (ACDK45_00500) | nudC | 95097..95891 (-) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| ACDK45_RS00505 (ACDK45_00505) | nfuA | 95959..96555 (-) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| ACDK45_RS00510 (ACDK45_00510) | - | 96631..97317 (-) | 687 | WP_011272045.1 | ComF family protein | - |
| ACDK45_RS00515 (ACDK45_00515) | comE | 97330..98667 (-) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| ACDK45_RS00520 (ACDK45_00520) | comD | 98677..99090 (-) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| ACDK45_RS00525 (ACDK45_00525) | comC | 99087..99608 (-) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| ACDK45_RS00530 (ACDK45_00530) | comB | 99605..100112 (-) | 508 | Protein_103 | competence protein ComB | - |
| ACDK45_RS00535 (ACDK45_00535) | comA | 100113..100910 (-) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| ACDK45_RS00540 (ACDK45_00540) | - | 101009..103604 (+) | 2596 | Protein_105 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=1040073 ACDK45_RS00520 WP_011272047.1 98677..99090(-) (comD) [Haemophilus influenzae strain NTHi52]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=1040073 ACDK45_RS00520 WP_011272047.1 98677..99090(-) (comD) [Haemophilus influenzae strain NTHi52]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |