Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACCQ01_RS16915 Genome accession   NZ_CP167840
Coordinates   3815972..3817366 (+) Length   464 a.a.
NCBI ID   WP_228431844.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 4037     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3810972..3822366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ01_RS16900 (ACCQ01_16900) sucD 3811850..3812725 (-) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  ACCQ01_RS16905 (ACCQ01_16905) sucC 3812750..3813919 (-) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCQ01_RS16910 (ACCQ01_16910) - 3814153..3815763 (+) 1611 WP_228431845.1 PAS domain-containing sensor histidine kinase -
  ACCQ01_RS16915 (ACCQ01_16915) pilR 3815972..3817366 (+) 1395 WP_228431844.1 sigma-54 dependent transcriptional regulator Regulator
  ACCQ01_RS16925 (ACCQ01_16925) pilB 3817778..3819511 (-) 1734 WP_228431843.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ01_RS16930 (ACCQ01_16930) - 3819615..3820253 (-) 639 WP_228431842.1 methionine biosynthesis protein MetW -
  ACCQ01_RS16935 (ACCQ01_16935) - 3820246..3821292 (-) 1047 WP_081390738.1 glycosyltransferase family 2 protein -
  ACCQ01_RS16940 (ACCQ01_16940) - 3821289..3822083 (-) 795 WP_076057322.1 glycosyltransferase family A protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50323.72 Da        Isoelectric Point: 6.5131

>NTDB_id=1039748 ACCQ01_RS16915 WP_228431844.1 3815972..3817366(+) (pilR) [Xanthomonas sp. NCPPB 4037]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1039748 ACCQ01_RS16915 WP_228431844.1 3815972..3817366(+) (pilR) [Xanthomonas sp. NCPPB 4037]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCACTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGATATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAAAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAAGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGTCACA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAACCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGAGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTACTACCGCATCAACGTGATCGAGCTGCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCGATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTGCTTACCCAGTCCGCGCTCGA
TGCCCTGAACCAATACGGCTTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTCCGCCTGCCCGCCCATGGCGGCCATCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTCGTCGACATCGACCCTGCCTCCTCCGCCCTGCCCTCTTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment