Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   ACCO40_RS18935 Genome accession   NZ_CP167793
Coordinates   3710516..3710635 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus spizizenii strain SHT-15     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3705516..3715635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO40_RS18915 (ACCO40_18915) - 3705686..3706969 (+) 1284 WP_372402256.1 M16 family metallopeptidase -
  ACCO40_RS18920 (ACCO40_18920) - 3706966..3707667 (+) 702 WP_114151115.1 bacteriocin biosynthesis protein AlbG -
  ACCO40_RS18925 (ACCO40_18925) - 3707805..3709160 (-) 1356 WP_114151114.1 YncE family protein -
  ACCO40_RS18930 (ACCO40_18930) rapF 3709387..3710532 (+) 1146 WP_061186515.1 response regulator aspartate phosphatase RapF Regulator
  ACCO40_RS18935 (ACCO40_18935) phrF 3710516..3710635 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  ACCO40_RS18940 (ACCO40_18940) - 3710876..3711355 (+) 480 WP_041521094.1 hypothetical protein -
  ACCO40_RS18945 (ACCO40_18945) - 3711504..3712292 (+) 789 WP_072183590.1 hypothetical protein -
  ACCO40_RS18950 (ACCO40_18950) - 3712279..3712953 (+) 675 WP_061186516.1 hypothetical protein -
  ACCO40_RS18955 (ACCO40_18955) - 3712963..3713760 (+) 798 WP_252359860.1 hypothetical protein -
  ACCO40_RS18960 (ACCO40_18960) - 3713763..3714410 (+) 648 WP_003235909.1 ABC transporter ATP-binding protein -
  ACCO40_RS18965 (ACCO40_18965) - 3714403..3714963 (+) 561 WP_014115561.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=1039455 ACCO40_RS18935 WP_009968329.1 3710516..3710635(+) (phrF) [Bacillus spizizenii strain SHT-15]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1039455 ACCO40_RS18935 WP_009968329.1 3710516..3710635(+) (phrF) [Bacillus spizizenii strain SHT-15]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment