Detailed information
Bioinformatically predicted
Overview
| Name | rapF | Type | Regulator |
| Locus tag | ACCO40_RS18930 | Genome accession | NZ_CP167793 |
| Coordinates | 3709387..3710532 (+) | Length | 381 a.a. |
| NCBI ID | WP_061186515.1 | Uniprot ID | - |
| Organism | Bacillus spizizenii strain SHT-15 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3704387..3715532
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACCO40_RS18910 (ACCO40_18910) | - | 3704521..3705681 (+) | 1161 | WP_372402810.1 | insulinase family protein | - |
| ACCO40_RS18915 (ACCO40_18915) | - | 3705686..3706969 (+) | 1284 | WP_372402256.1 | M16 family metallopeptidase | - |
| ACCO40_RS18920 (ACCO40_18920) | - | 3706966..3707667 (+) | 702 | WP_114151115.1 | bacteriocin biosynthesis protein AlbG | - |
| ACCO40_RS18925 (ACCO40_18925) | - | 3707805..3709160 (-) | 1356 | WP_114151114.1 | YncE family protein | - |
| ACCO40_RS18930 (ACCO40_18930) | rapF | 3709387..3710532 (+) | 1146 | WP_061186515.1 | response regulator aspartate phosphatase RapF | Regulator |
| ACCO40_RS18935 (ACCO40_18935) | phrF | 3710516..3710635 (+) | 120 | WP_009968329.1 | phosphatase RapF inhibitor PhrF | Regulator |
| ACCO40_RS18940 (ACCO40_18940) | - | 3710876..3711355 (+) | 480 | WP_041521094.1 | hypothetical protein | - |
| ACCO40_RS18945 (ACCO40_18945) | - | 3711504..3712292 (+) | 789 | WP_072183590.1 | hypothetical protein | - |
| ACCO40_RS18950 (ACCO40_18950) | - | 3712279..3712953 (+) | 675 | WP_061186516.1 | hypothetical protein | - |
| ACCO40_RS18955 (ACCO40_18955) | - | 3712963..3713760 (+) | 798 | WP_252359860.1 | hypothetical protein | - |
| ACCO40_RS18960 (ACCO40_18960) | - | 3713763..3714410 (+) | 648 | WP_003235909.1 | ABC transporter ATP-binding protein | - |
| ACCO40_RS18965 (ACCO40_18965) | - | 3714403..3714963 (+) | 561 | WP_014115561.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 381 a.a. Molecular weight: 45600.06 Da Isoelectric Point: 5.2464
>NTDB_id=1039454 ACCO40_RS18930 WP_061186515.1 3709387..3710532(+) (rapF) [Bacillus spizizenii strain SHT-15]
MTGVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLIEIDKKQARLTGVLDYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAENQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHAYHSKGMAYSQKAGDLIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFALDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVRLYEIEV
MTGVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLIEIDKKQARLTGVLDYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAENQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHAYHSKGMAYSQKAGDLIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFALDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVRLYEIEV
Nucleotide
Download Length: 1146 bp
>NTDB_id=1039454 ACCO40_RS18930 WP_061186515.1 3709387..3710532(+) (rapF) [Bacillus spizizenii strain SHT-15]
GTGACAGGTGTCATATCTTCTTCTTCCGTCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAGTATTTGCGAAGAGAAATCAAACAAGAGCTGGATCAAATGGAAGAAGATCAGGATCTTCATTTGTACTATT
CACTGATGGAATTCCGGCACAACCTGATGCTTGAGTACCTTGAACCACTAGAGAAAATGCGGATCGAGGAACAGCCGAGA
TTGTCAGATTTGCTGATTGAGATTGATAAAAAACAGGCTCGTTTAACTGGAGTCCTTGATTATTACTTTAATTTCTTCAG
GGGCATGTATGAGCTAGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTTAAAAAGGCCGAAAGCAAGTTGATATTTG
TTAAGGATCGAATAGAGAAGGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAGGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTACTCTATGGCAGAAG
CTGAAAATCAGCCCCAATTAATGGGAAGAACATTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCCCATGCATATCATAGTAAGGGAATGGCTTATTCTCAAA
AGGCCGGAGATTTAATATATTTATCGGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCTGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTCTTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTCTGAAGGTGGAACAAGTGAGGCAACTTATTCAAGGAGGAG
TGAGATTGTATGAAATTGAAGTCTAA
GTGACAGGTGTCATATCTTCTTCTTCCGTCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAGTATTTGCGAAGAGAAATCAAACAAGAGCTGGATCAAATGGAAGAAGATCAGGATCTTCATTTGTACTATT
CACTGATGGAATTCCGGCACAACCTGATGCTTGAGTACCTTGAACCACTAGAGAAAATGCGGATCGAGGAACAGCCGAGA
TTGTCAGATTTGCTGATTGAGATTGATAAAAAACAGGCTCGTTTAACTGGAGTCCTTGATTATTACTTTAATTTCTTCAG
GGGCATGTATGAGCTAGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTTAAAAAGGCCGAAAGCAAGTTGATATTTG
TTAAGGATCGAATAGAGAAGGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAGGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTACTCTATGGCAGAAG
CTGAAAATCAGCCCCAATTAATGGGAAGAACATTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCCCATGCATATCATAGTAAGGGAATGGCTTATTCTCAAA
AGGCCGGAGATTTAATATATTTATCGGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCTGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTCTTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTCTGAAGGTGGAACAAGTGAGGCAACTTATTCAAGGAGGAG
TGAGATTGTATGAAATTGAAGTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
97.113 |
100 |
0.971 |
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
57.632 |
99.738 |
0.575 |