Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACCO40_RS15820 Genome accession   NZ_CP167793
Coordinates   3078867..3079511 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus spizizenii strain SHT-15     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3073867..3084511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO40_RS15785 (ACCO40_15785) - 3075062..3075493 (+) 432 WP_014114977.1 Na(+)/H(+) antiporter subunit B -
  ACCO40_RS15790 (ACCO40_15790) - 3075493..3075834 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ACCO40_RS15795 (ACCO40_15795) - 3075827..3077308 (+) 1482 WP_041521055.1 Na+/H+ antiporter subunit D -
  ACCO40_RS15800 (ACCO40_15800) - 3077314..3077790 (+) 477 WP_014114979.1 Na+/H+ antiporter subunit E -
  ACCO40_RS15805 (ACCO40_15805) - 3077790..3078074 (+) 285 WP_014114980.1 Na(+)/H(+) antiporter subunit F1 -
  ACCO40_RS15810 (ACCO40_15810) mnhG 3078058..3078432 (+) 375 WP_014114981.1 monovalent cation/H(+) antiporter subunit G -
  ACCO40_RS15815 (ACCO40_15815) - 3078471..3078851 (-) 381 WP_003220719.1 hotdog fold thioesterase -
  ACCO40_RS15820 (ACCO40_15820) comA 3078867..3079511 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ACCO40_RS15825 (ACCO40_15825) comP 3079592..3081889 (-) 2298 WP_268454382.1 histidine kinase Regulator
  ACCO40_RS15830 (ACCO40_15830) comX 3081897..3082058 (-) 162 WP_010331692.1 competence pheromone ComX -
  ACCO40_RS15835 (ACCO40_15835) - 3082072..3082932 (-) 861 WP_372401933.1 polyprenyl synthetase family protein -
  ACCO40_RS15840 (ACCO40_15840) degQ 3083117..3083257 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ACCO40_RS15845 (ACCO40_15845) - 3083479..3083604 (+) 126 WP_014114985.1 hypothetical protein -
  ACCO40_RS15850 (ACCO40_15850) - 3083719..3084087 (+) 369 WP_014114986.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1039442 ACCO40_RS15820 WP_003220716.1 3078867..3079511(-) (comA) [Bacillus spizizenii strain SHT-15]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1039442 ACCO40_RS15820 WP_003220716.1 3078867..3079511(-) (comA) [Bacillus spizizenii strain SHT-15]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATATTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTTGAGGATTATTTTGAGGAAGCGATTCGTGCGGGACTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCACTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment