Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACDJ02_RS02100 Genome accession   NZ_CP167777
Coordinates   443205..444773 (-) Length   522 a.a.
NCBI ID   WP_372375854.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain E5131942     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 438205..449773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDJ02_RS02085 (ACDJ02_02085) gpmI 438997..440547 (+) 1551 WP_151724151.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACDJ02_RS02090 (ACDJ02_02090) - 440559..441737 (+) 1179 WP_151724152.1 S41 family peptidase -
  ACDJ02_RS02095 (ACDJ02_02095) pilR 441755..443185 (-) 1431 WP_049175808.1 sigma-54 dependent transcriptional regulator Regulator
  ACDJ02_RS02100 (ACDJ02_02100) pilS 443205..444773 (-) 1569 WP_372375854.1 ATP-binding protein Regulator
  ACDJ02_RS02105 (ACDJ02_02105) - 444795..445430 (-) 636 WP_004995355.1 response regulator -
  ACDJ02_RS02110 (ACDJ02_02110) pbpG 445645..446706 (+) 1062 WP_080633167.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACDJ02_RS02115 (ACDJ02_02115) thrC 446808..447947 (-) 1140 WP_372375856.1 threonine synthase -
  ACDJ02_RS02120 (ACDJ02_02120) - 448008..449309 (-) 1302 WP_010588808.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59626.43 Da        Isoelectric Point: 6.3854

>NTDB_id=1039297 ACDJ02_RS02100 WP_372375854.1 443205..444773(-) (pilS) [Acinetobacter ursingii strain E5131942]
MQAQSSTPLSYTIYRLGLWYTLYRLLIVTGLIIIFQLISEQLNADYNQPVLYFYTLIAYCVASLIQFLLFKFYPRQIDRQ
LIIVFVVDVIALGLLTFSLGAPNLNISLLYVITVFSAAILLPRKVSLVITLLAVISLIYQQFFSSFFDYNNLSTIGNSAL
LAFLFFVMYGIGQVAVKHFKILENISFRQSQALYQLQNINRYILEQIDDGYLVLDENYHVVLSNPAACTLLGIPPLFAHE
QLPLAKTQPDLFELLRFDPLEDGEQFIFESQLSTYNVHIKVQRLIVPHQALILLRLQDVQQLNQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELYIGSKSEQQHLLQKMISKQSKRINDIIEDTLRMARNDTTHPMLIELDSFLSHLLTEDLSDVQ
HQIHLEMTEKVIVQFDPKQLTQVLINLIRNALRHNDPDVDQIVLSVRMVQAEVFIDVIDFGNGIEKRDISQLFKPFFSTE
IKGTGLGLYLSHSLCEANHAKLSYVEQQKGACFRIQCSTKDK

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=1039297 ACDJ02_RS02100 WP_372375854.1 443205..444773(-) (pilS) [Acinetobacter ursingii strain E5131942]
ATGCAGGCGCAATCTTCTACGCCACTTTCTTATACGATTTACCGTTTAGGTTTGTGGTACACCCTTTACCGCCTGCTTAT
TGTCACAGGTTTAATCATTATTTTTCAGCTCATTTCTGAGCAGTTAAATGCCGACTATAATCAACCTGTATTGTATTTTT
ATACGCTTATCGCTTATTGCGTAGCCAGTCTGATTCAGTTTTTATTGTTTAAGTTTTATCCACGACAGATTGATCGTCAA
CTGATTATAGTGTTTGTGGTTGATGTCATTGCATTGGGATTGCTGACATTTTCTCTGGGCGCACCAAATTTAAATATTAG
TTTGCTGTATGTTATTACGGTGTTTTCTGCCGCGATTTTACTGCCCAGAAAAGTCTCTTTGGTGATCACGCTTCTTGCTG
TTATTTCACTGATCTATCAACAGTTTTTTTCAAGTTTTTTTGATTATAATAATTTAAGCACCATTGGAAATAGTGCTTTA
CTGGCTTTTTTGTTTTTTGTCATGTATGGCATTGGTCAAGTTGCTGTAAAACATTTTAAAATTCTGGAAAATATTAGCTT
TCGTCAATCCCAAGCGCTATATCAACTTCAAAATATTAATCGTTATATTTTAGAACAAATTGATGATGGCTATCTGGTAT
TAGATGAAAACTACCATGTGGTGCTCAGCAATCCAGCCGCCTGTACGCTGTTGGGCATTCCGCCATTATTTGCGCATGAA
CAACTTCCGTTAGCCAAAACCCAGCCCGATTTATTTGAGCTCTTAAGATTTGATCCCCTAGAAGACGGCGAACAGTTTAT
TTTTGAATCACAACTGTCTACTTATAACGTGCATATTAAGGTACAACGTTTGATCGTGCCACATCAGGCTTTAATTTTAT
TGCGCTTGCAGGATGTACAGCAGCTCAATCAACAGGTTCAACAGCTTAAACTTGCCGCTTTAGGACAACTTTCCGCCAGT
ATTGCACACGAAATTCGTAACCCATTGGCAGCGATTGTACAGGCCAATGAACTGTATATTGGCAGCAAATCTGAACAGCA
ACATTTACTGCAAAAAATGATCAGTAAACAATCAAAACGTATCAATGATATTATTGAAGATACATTGCGTATGGCGCGTA
ATGACACCACGCATCCGATGCTGATTGAATTAGATAGCTTTTTGTCTCATTTACTGACTGAAGATTTATCCGATGTTCAA
CATCAAATCCATTTGGAAATGACCGAGAAGGTAATCGTTCAATTTGATCCAAAACAGTTAACCCAAGTTTTAATCAACCT
GATTCGCAATGCATTACGCCATAATGATCCAGATGTTGATCAGATTGTTTTATCCGTACGTATGGTTCAAGCTGAAGTAT
TCATTGATGTGATTGATTTTGGCAATGGCATCGAAAAACGTGATATATCGCAACTATTTAAGCCATTTTTTAGTACCGAA
ATCAAGGGAACTGGTTTAGGATTATATTTGTCCCATAGTCTGTGTGAAGCCAATCACGCCAAGCTCAGTTATGTGGAACA
ACAAAAAGGAGCATGTTTTAGAATTCAATGCTCAACAAAAGATAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-376)

PAS domain (PAS_8)

(201-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

63.514

99.234

0.63

Multiple sequence alignment