Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACDJ02_RS02095 Genome accession   NZ_CP167777
Coordinates   441755..443185 (-) Length   476 a.a.
NCBI ID   WP_049175808.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain E5131942     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 436755..448185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDJ02_RS02080 (ACDJ02_02080) lptG 437795..438865 (+) 1071 WP_010588813.1 LPS export ABC transporter permease LptG -
  ACDJ02_RS02085 (ACDJ02_02085) gpmI 438997..440547 (+) 1551 WP_151724151.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACDJ02_RS02090 (ACDJ02_02090) - 440559..441737 (+) 1179 WP_151724152.1 S41 family peptidase -
  ACDJ02_RS02095 (ACDJ02_02095) pilR 441755..443185 (-) 1431 WP_049175808.1 sigma-54 dependent transcriptional regulator Regulator
  ACDJ02_RS02100 (ACDJ02_02100) pilS 443205..444773 (-) 1569 WP_372375854.1 ATP-binding protein Regulator
  ACDJ02_RS02105 (ACDJ02_02105) - 444795..445430 (-) 636 WP_004995355.1 response regulator -
  ACDJ02_RS02110 (ACDJ02_02110) pbpG 445645..446706 (+) 1062 WP_080633167.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACDJ02_RS02115 (ACDJ02_02115) thrC 446808..447947 (-) 1140 WP_372375856.1 threonine synthase -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53676.58 Da        Isoelectric Point: 6.6692

>NTDB_id=1039296 ACDJ02_RS02095 WP_049175808.1 441755..443185(-) (pilR) [Acinetobacter ursingii strain E5131942]
MVNKQPLVLLVDDEEDLCALMQMTLARMGIATHCAYRIAQAKELLQNNNYDACLTDLNLPDGNGLDLVHYVTQHWSHLPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQIHLEQLLQKAFNRPQKQIINDEDSLENRLLIGRSAPIQQLRTTLKKIARS
QAPVFVTGESGTGKEVIANLVHRLSNRSEGPFIAINCGAIPSELLESELFGHKKGSFSGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKVRPVGSEHEIDVDFRVISASHQDLETLVQQGKFRQDLFFRIHVMDLELPPLRERGQDILL
LAHHFIQKVCAEWEIPVKILSERAQAFLLEQYFPGNVRELRNMMERAITLSDDHQIDLPHLQTAPFRYSQATAPIQHHSD
YLSSANSNHSVPTTLANNKLPHEGLEQYLENVEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEEI

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=1039296 ACDJ02_RS02095 WP_049175808.1 441755..443185(-) (pilR) [Acinetobacter ursingii strain E5131942]
ATGGTGAATAAACAACCGCTGGTTTTACTGGTTGATGATGAAGAAGATCTCTGTGCGTTAATGCAAATGACGCTGGCACG
TATGGGGATAGCAACACATTGTGCTTATCGTATTGCACAAGCGAAAGAACTTCTGCAAAACAATAATTATGATGCCTGTT
TGACTGATTTAAATCTGCCTGATGGCAATGGGCTAGATCTGGTGCATTATGTTACACAGCATTGGAGTCACTTGCCTATC
GCGGTGTTAACCGCCTATGGCAACATGGATATTGCAATTGCAGCACTTAAAGCAGGTGCTTTTGATTTTGTCAGCAAGCC
TGTCAACCAAATTCATTTAGAACAATTATTACAAAAAGCTTTTAATCGACCACAAAAGCAGATCATCAATGATGAAGATA
GTCTGGAAAACAGACTGCTCATTGGCCGTTCTGCACCGATCCAGCAACTACGCACCACGCTTAAGAAAATTGCACGCTCA
CAAGCACCCGTCTTTGTCACAGGAGAATCTGGCACAGGCAAGGAAGTGATCGCCAATCTGGTACACCGTTTAAGTAATCG
CAGCGAAGGCCCATTTATTGCCATTAACTGTGGTGCAATTCCCAGTGAACTTTTAGAGAGTGAGCTATTCGGTCACAAAA
AAGGAAGTTTTAGCGGTGCAACTCAAGACAAACAAGGTCTGATCTTATCGGCACATGGCGGTAGTTTATTTCTGGATGAA
ATCGCTGAATTACCTTTGAATATGCAAGTTAAACTGTTACGGGCTGTACAAGAGAAAAAAGTTCGTCCAGTGGGTTCTGA
ACACGAAATTGATGTGGATTTTCGGGTGATTAGTGCCAGTCATCAGGATCTTGAAACATTGGTACAACAAGGTAAATTCC
GTCAGGATTTATTTTTCCGTATTCATGTGATGGATCTTGAACTTCCTCCATTACGTGAACGTGGACAGGACATTTTACTC
CTAGCCCATCATTTTATTCAAAAAGTGTGTGCTGAATGGGAAATTCCAGTCAAGATTCTGTCTGAACGCGCTCAGGCTTT
TTTATTAGAACAATATTTCCCCGGTAATGTTCGTGAATTACGTAATATGATGGAACGAGCCATTACTTTAAGTGATGATC
ATCAAATTGATTTACCTCACTTACAAACCGCACCTTTTCGTTATAGCCAAGCAACGGCACCGATTCAACATCATTCTGAT
TATCTTTCTAGCGCAAATTCAAATCACTCAGTTCCTACGACATTGGCAAACAACAAACTGCCACACGAAGGGTTAGAACA
ATATTTAGAAAACGTTGAAAAAGAGATTCTCTTAAATGCACTCAATTTGACGCATTGGAATCGTACTTTGGCGGCCAAAA
AACTAGGCATGACTTTTCGATCTTTGCGCTATCGCCTGAAAAAATTTGGTTTAGATACTGAAGAGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(429-469)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

76.778

100

0.771
  pilR Pseudomonas aeruginosa PAK

49.462

97.689

0.483

Multiple sequence alignment