Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACCQ24_RS15565 Genome accession   NZ_CP167237
Coordinates   3691096..3692490 (+) Length   464 a.a.
NCBI ID   WP_042773941.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. patelii strain NCPPB 840     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3686096..3697490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ24_RS15545 (ACCQ24_15545) - 3686339..3686683 (-) 345 WP_218502950.1 ribbon-helix-helix domain-containing protein -
  ACCQ24_RS15550 (ACCQ24_15550) sucD 3686854..3687729 (-) 876 WP_029820064.1 succinate--CoA ligase subunit alpha -
  ACCQ24_RS15555 (ACCQ24_15555) sucC 3687754..3688923 (-) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCQ24_RS15560 (ACCQ24_15560) - 3689155..3690768 (+) 1614 WP_372167542.1 PAS domain-containing sensor histidine kinase -
  ACCQ24_RS15565 (ACCQ24_15565) pilR 3691096..3692490 (+) 1395 WP_042773941.1 sigma-54 dependent transcriptional regulator Regulator
  ACCQ24_RS15570 (ACCQ24_15570) pilB 3692894..3694603 (-) 1710 WP_372167543.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ24_RS15575 (ACCQ24_15575) - 3694697..3695152 (-) 456 WP_372166330.1 pilin -
  ACCQ24_RS15580 (ACCQ24_15580) - 3695259..3695696 (-) 438 WP_372166331.1 pilin -
  ACCQ24_RS15585 (ACCQ24_15585) pilC 3696046..3697302 (+) 1257 WP_372166332.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50192.59 Da        Isoelectric Point: 6.5718

>NTDB_id=1039094 ACCQ24_RS15565 WP_042773941.1 3691096..3692490(+) (pilR) [Xanthomonas axonopodis pv. patelii strain NCPPB 840]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAPGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAVPNGGAA
AEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1039094 ACCQ24_RS15565 WP_042773941.1 3691096..3692490(+) (pilR) [Xanthomonas axonopodis pv. patelii strain NCPPB 840]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCTTGCGCATCAGCACCGCGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGA
CCGACATGCGGTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGCGCCCCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCAGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTAATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGA
CGCATTGAATCACTACGGCTTCCCAGGCAACGTACGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCTGTCCCCAACGGAGGTGCCGCG
GCCGAGCCGCGCGAAGCCGTCGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCACTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGC
TGCGTTACAAGTTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment