Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACBW56_RS16380 Genome accession   NZ_CP167196
Coordinates   3322360..3323745 (+) Length   461 a.a.
NCBI ID   WP_043867470.1    Uniprot ID   -
Organism   Bacillus velezensis strain FRI-TD24     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3317360..3328745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBW56_RS16360 (ACBW56_16360) - 3318507..3319154 (-) 648 WP_003151384.1 YigZ family protein -
  ACBW56_RS16365 (ACBW56_16365) degS 3319377..3320540 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACBW56_RS16370 (ACBW56_16370) degU 3320617..3321306 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACBW56_RS16375 (ACBW56_16375) - 3321404..3322252 (+) 849 WP_003151387.1 DegV family protein -
  ACBW56_RS16380 (ACBW56_16380) comFA 3322360..3323745 (+) 1386 WP_043867470.1 DEAD/DEAH box helicase Machinery gene
  ACBW56_RS16385 (ACBW56_16385) - 3323803..3324087 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  ACBW56_RS16390 (ACBW56_16390) comFC 3324093..3324782 (+) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  ACBW56_RS16395 (ACBW56_16395) - 3324856..3325275 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACBW56_RS16400 (ACBW56_16400) flgM 3325345..3325611 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACBW56_RS16405 (ACBW56_16405) - 3325626..3326108 (+) 483 WP_003151394.1 flagellar protein FlgN -
  ACBW56_RS16410 (ACBW56_16410) flgK 3326124..3327641 (+) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  ACBW56_RS16415 (ACBW56_16415) flgL 3327653..3328570 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52558.09 Da        Isoelectric Point: 10.0979

>NTDB_id=1038797 ACBW56_RS16380 WP_043867470.1 3322360..3323745(+) (comFA) [Bacillus velezensis strain FRI-TD24]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHCIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTLLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQELQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1038797 ACBW56_RS16380 WP_043867470.1 3322360..3323745(+) (comFA) [Bacillus velezensis strain FRI-TD24]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATTGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATTATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGCACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAGAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCTAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(326-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631

Multiple sequence alignment