Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACBW56_RS16370 Genome accession   NZ_CP167196
Coordinates   3320617..3321306 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain FRI-TD24     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3315617..3326306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBW56_RS16350 (ACBW56_16350) - 3316122..3317198 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  ACBW56_RS16355 (ACBW56_16355) - 3317288..3318502 (-) 1215 WP_160249190.1 LCP family protein -
  ACBW56_RS16360 (ACBW56_16360) - 3318507..3319154 (-) 648 WP_003151384.1 YigZ family protein -
  ACBW56_RS16365 (ACBW56_16365) degS 3319377..3320540 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACBW56_RS16370 (ACBW56_16370) degU 3320617..3321306 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACBW56_RS16375 (ACBW56_16375) - 3321404..3322252 (+) 849 WP_003151387.1 DegV family protein -
  ACBW56_RS16380 (ACBW56_16380) comFA 3322360..3323745 (+) 1386 WP_043867470.1 DEAD/DEAH box helicase Machinery gene
  ACBW56_RS16385 (ACBW56_16385) - 3323803..3324087 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  ACBW56_RS16390 (ACBW56_16390) comFC 3324093..3324782 (+) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  ACBW56_RS16395 (ACBW56_16395) - 3324856..3325275 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACBW56_RS16400 (ACBW56_16400) flgM 3325345..3325611 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACBW56_RS16405 (ACBW56_16405) - 3325626..3326108 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1038796 ACBW56_RS16370 WP_003219701.1 3320617..3321306(+) (degU) [Bacillus velezensis strain FRI-TD24]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1038796 ACBW56_RS16370 WP_003219701.1 3320617..3321306(+) (degU) [Bacillus velezensis strain FRI-TD24]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment