Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACB088_RS18325 Genome accession   NZ_CP167121
Coordinates   3870958..3871587 (-) Length   209 a.a.
NCBI ID   WP_375038825.1    Uniprot ID   -
Organism   Acinetobacter sp. RW6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3865958..3876587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB088_RS18290 (ACB088_18290) mlaE 3866285..3867064 (+) 780 WP_005038455.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ACB088_RS18295 (ACB088_18295) - 3867064..3867747 (+) 684 WP_198078130.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACB088_RS18300 (ACB088_18300) - 3867774..3868415 (+) 642 WP_005038459.1 phospholipid-binding protein MlaC -
  ACB088_RS18305 (ACB088_18305) - 3868427..3868714 (+) 288 WP_003653685.1 lipid asymmetry maintenance protein MlaB -
  ACB088_RS18310 (ACB088_18310) - 3868787..3869800 (-) 1014 WP_004639553.1 magnesium and cobalt transport protein CorA -
  ACB088_RS18315 (ACB088_18315) - 3869959..3870540 (+) 582 WP_375037651.1 TIGR00730 family Rossman fold protein -
  ACB088_RS18320 (ACB088_18320) - 3870554..3870952 (+) 399 WP_133747466.1 NUDIX domain-containing protein -
  ACB088_RS18325 (ACB088_18325) comF 3870958..3871587 (-) 630 WP_375038825.1 ComF family protein Machinery gene
  ACB088_RS18330 (ACB088_18330) recG 3871580..3873625 (-) 2046 WP_375037652.1 ATP-dependent DNA helicase RecG -
  ACB088_RS18335 (ACB088_18335) - 3873646..3874461 (+) 816 WP_375037653.1 SDR family NAD(P)-dependent oxidoreductase -
  ACB088_RS18340 (ACB088_18340) - 3874541..3875524 (+) 984 WP_375037654.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24294.38 Da        Isoelectric Point: 9.0217

>NTDB_id=1038318 ACB088_RS18325 WP_375038825.1 3870958..3871587(-) (comF) [Acinetobacter sp. RW6]
MFSFLNPQHLIHSLSPCLLCESGVREKDSLCKDCWEQLPWLKQIIQRNDQTVLVACDYAYPINRIIQQFKYEQKLHYQIL
LGEILQQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSKQLKIPVWQPVQRLAEHSQKGLSRLERFENIEQQFIAF
TQEKRRYRRVFVIDDVVTTGSSIYALNQVLKQLGCTTIHAACLAATLTN

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1038318 ACB088_RS18325 WP_375038825.1 3870958..3871587(-) (comF) [Acinetobacter sp. RW6]
ATGTTTAGTTTCTTAAATCCGCAGCATCTTATCCACTCACTCTCACCTTGCTTGTTGTGTGAGTCAGGTGTGCGAGAAAA
AGATTCGCTCTGTAAGGACTGTTGGGAACAGTTACCATGGCTTAAACAAATAATTCAACGTAATGATCAAACCGTTCTTG
TGGCCTGTGATTATGCATATCCAATCAATCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTATCAAATCTTA
TTAGGTGAAATTTTACAACAACTCAAATTTCCTAAGGTACAGGCGATTGTACCCATGCCGATTTCGAATCAACGCTTAAT
TGAACGTGGTTTTAATCAGTCACTATTGCTCGCAAATATCTTAAGCAAGCAATTAAAAATACCTGTTTGGCAGCCAGTGC
AACGCCTTGCTGAGCATTCGCAAAAAGGGCTTTCTCGACTGGAACGCTTTGAGAACATTGAGCAACAATTTATTGCATTT
ACTCAAGAAAAACGGCGTTATCGCCGTGTGTTCGTTATTGATGATGTCGTTACCACTGGAAGTTCAATTTACGCCCTTAA
TCAGGTATTAAAGCAACTAGGATGTACAACCATTCATGCCGCTTGTTTAGCGGCAACTTTAACGAACTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

85.437

98.565

0.842
  comF Acinetobacter baumannii D1279779

84.466

98.565

0.833

Multiple sequence alignment