Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACB088_RS15030 Genome accession   NZ_CP167121
Coordinates   3175653..3177071 (+) Length   472 a.a.
NCBI ID   WP_375037339.1    Uniprot ID   -
Organism   Acinetobacter sp. RW6     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3170653..3182071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB088_RS15010 (ACB088_15010) thrC 3170911..3172050 (+) 1140 WP_375037337.1 threonine synthase -
  ACB088_RS15015 (ACB088_15015) pbpG 3172157..3173203 (-) 1047 WP_003654437.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACB088_RS15020 (ACB088_15020) - 3173416..3174051 (+) 636 WP_003654436.1 response regulator -
  ACB088_RS15025 (ACB088_15025) pilS 3174061..3175629 (+) 1569 WP_375037338.1 ATP-binding protein Regulator
  ACB088_RS15030 (ACB088_15030) pilR 3175653..3177071 (+) 1419 WP_375037339.1 sigma-54-dependent transcriptional regulator Regulator
  ACB088_RS15035 (ACB088_15035) - 3177076..3178260 (-) 1185 WP_004640654.1 S41 family peptidase -
  ACB088_RS15040 (ACB088_15040) gpmI 3178276..3179823 (-) 1548 WP_375037340.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACB088_RS15045 (ACB088_15045) lptG 3179950..3181020 (-) 1071 WP_092709631.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 52970.20 Da        Isoelectric Point: 6.3929

>NTDB_id=1038299 ACB088_RS15030 WP_375037339.1 3175653..3177071(+) (pilR) [Acinetobacter sp. RW6]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQTYSHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGEITLENDLLIGRSPPIQNLRIAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDILLPPLRERGGDILL
LANHFIQKVCMEWEIPSKQLTTTAETYLLQQDFPGNVRELRNMIERAITLSDDECIDLTHLAPPLRGSSVNSQIATKQVN
QTSTAITQTRPKLPMEGLERYLENIEKDILLNALDMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTELGEEV

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=1038299 ACB088_RS15030 WP_375037339.1 3175653..3177071(+) (pilR) [Acinetobacter sp. RW6]
ATGGCAGAACAGCAACCACTAGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACTCTTGCGCG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTATGATGCATGCT
TAACCGATTTAAACCTACCCGATGGTAGCGGTTTAGAATTAGTTAAACATGTTTCTCAAACTTATTCTCACACACCAATT
GCAGTTCTAACTGCGTACGGCAATATGGATATTGCAATTGCAGCATTAAAGGCGGGAGCTTTTGATTTTGTAAGCAAACC
TATTAACCAAATTCATTTAGATCAGTTATTAAAAAAAGCGCTAAATCAGCCAAAACCAGAGCATGAGTTTGGTGAAATAA
CGTTGGAAAATGACCTATTAATTGGACGTTCTCCACCGATACAAAACCTACGTATTGCTATAAAAAAAATAGCTCGTTCC
CAAGCTCCGGTGTTTGTGACAGGCGAGTCTGGTACAGGTAAAGAAGTTGTTGCTAATCTTATTCACCGTTTGAGTAACCG
CAGCGAAGGTCCATTTATTGCGATTAACTGTGGAGCAATTCCAACTGAGCTCATGGAAAGTGAACTTTTTGGACATAAAA
AAGGCAGTTTTACTGGAGCTACCCAAGACAAACAAGGCCTTATTTTGTCTGCTCATGGCGGCAGCTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTCAAATTACTTCGGGCAGTACAAGAGAAAAAAATTCGTCCAGTAGGTTCCGA
TCAGGAAATCGATGTTGATTTTCGGGTGATTAGCGCCAGCCACCAAGATTTAGATTTATTAGTTCGACAAGGTAAATTCC
GTCAGGATTTATTTTTCCGTATTCATGTTATGGATATCCTGTTACCGCCACTGCGTGAGCGCGGTGGAGATATTTTGTTA
TTAGCCAATCATTTTATTCAAAAGGTTTGTATGGAATGGGAAATTCCAAGCAAACAATTAACCACTACTGCTGAAACTTA
TTTATTGCAGCAAGATTTTCCAGGTAATGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACCTTAAGTGATGATG
AATGTATTGATTTAACACACTTAGCACCTCCTCTCAGAGGCAGTAGCGTTAACTCGCAAATCGCGACTAAACAAGTGAAT
CAAACATCAACAGCGATTACTCAGACTCGGCCAAAATTACCAATGGAAGGTTTAGAACGCTACTTAGAAAATATTGAAAA
AGATATTCTACTGAACGCGTTGGACATGACACATTGGAACCGGACCTTAGCAGCTAAAAAGCTTGGAATGACCTTCCGTT
CTTTACGCTATCGACTGAAAAAGTTTGGCTTAGATACTGAATTAGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

87.315

100

0.875
  pilR Pseudomonas aeruginosa PAK

50.542

97.669

0.494

Multiple sequence alignment