Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACB088_RS15025 Genome accession   NZ_CP167121
Coordinates   3174061..3175629 (+) Length   522 a.a.
NCBI ID   WP_375037338.1    Uniprot ID   -
Organism   Acinetobacter sp. RW6     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3169061..3180629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB088_RS15005 (ACB088_15005) - 3169555..3170856 (+) 1302 WP_004640662.1 homoserine dehydrogenase -
  ACB088_RS15010 (ACB088_15010) thrC 3170911..3172050 (+) 1140 WP_375037337.1 threonine synthase -
  ACB088_RS15015 (ACB088_15015) pbpG 3172157..3173203 (-) 1047 WP_003654437.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACB088_RS15020 (ACB088_15020) - 3173416..3174051 (+) 636 WP_003654436.1 response regulator -
  ACB088_RS15025 (ACB088_15025) pilS 3174061..3175629 (+) 1569 WP_375037338.1 ATP-binding protein Regulator
  ACB088_RS15030 (ACB088_15030) pilR 3175653..3177071 (+) 1419 WP_375037339.1 sigma-54-dependent transcriptional regulator Regulator
  ACB088_RS15035 (ACB088_15035) - 3177076..3178260 (-) 1185 WP_004640654.1 S41 family peptidase -
  ACB088_RS15040 (ACB088_15040) gpmI 3178276..3179823 (-) 1548 WP_375037340.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59034.45 Da        Isoelectric Point: 6.3149

>NTDB_id=1038298 ACB088_RS15025 WP_375037338.1 3174061..3175629(+) (pilS) [Acinetobacter sp. RW6]
MQFPLNSSLSNTIFRLGTWYGLYRLIIAVSLNIILVLTDSQIDNSLQQPALYSYTLLGYSILSLLQLLCFKFVATQATRQ
LILFFVVDIISLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHSDLFEILKFDNLQEGDRFIFESRLSAYSINIKVQHLVVPQQALTLLILQDAQHINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDLEQQNTLRRMIGKQTKRIDSIVQDTLGLASSERTHPIQIELNDFIKTLLDEDLSDVK
HSIQLKISDSSLKLLFDEKQLRQVLINLVRNALRHNAPDSPHVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRMECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=1038298 ACB088_RS15025 WP_375037338.1 3174061..3175629(+) (pilS) [Acinetobacter sp. RW6]
ATGCAATTTCCCTTAAACTCATCGTTGTCCAATACGATTTTTCGTTTGGGCACGTGGTATGGTTTATATCGTCTTATTAT
TGCGGTTAGCCTCAATATTATTTTGGTTTTAACCGATTCTCAAATCGACAATAGTCTACAACAACCCGCTTTATATTCTT
ACACACTGCTTGGCTATTCCATATTAAGCCTTCTTCAGCTTTTGTGTTTTAAGTTTGTTGCAACTCAGGCAACACGGCAG
CTTATTTTATTTTTTGTAGTTGATATTATCTCTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAACCTTCAACTTAG
CTTGCTGTATGTTATTGCTATATTCACCTCGGCAATTTTACTCAGCGCAAGAATGTCTTTACTCATTACATTACTTGCAG
TCATTGCGGTTATTTACCAACGTTTTGTCGGTAGTTTATTTGACTACAATAATCTTAATACGATTGGTAATAGTGCCCTT
CTAGCCTTCTTATTTTTTGTGGTGCATGGGATCGGGCAAATTGCGGTTCAGCGCTTTAAATTACTTGAGGCGCTTACGTT
TCACCAATCAATAGAGCTCTATCAACTACAAAATATTAACCGCTATATTCTGGAACAAATTGAAGAAGGTTATCTTGTTC
TAGATGAAAACTATGACATTGTTTTAAGTAATCCGGCTGCCTGCTCTCTGTTAGGGATTCCGCCACAATTTGCCAGTGAA
AAATATCCTTTAGCTAAATGGCACTCCGATTTATTTGAAATTCTTAAGTTTGATAACCTACAAGAAGGTGATCGATTTAT
TTTTGAGTCTCGTCTGTCGGCTTACTCTATTAACATTAAAGTGCAGCATCTTGTGGTGCCGCAACAAGCATTGACGCTAC
TCATCTTACAAGATGCACAACACATTAATCAGCAAGCTCAACAACTCAAACTGGCTGCTTTAGGGCAACTTTCAGCCAGT
ATTGCACATGAAATCCGTAATCCTCTGGCAGCAATTGTTCAGGCAAATGAATTACTTAAAGATAGTGATTTAGAGCAGCA
AAATACTTTACGCCGTATGATTGGTAAGCAAACAAAACGTATTGATAGTATTGTTCAAGACACCTTAGGACTTGCCAGCA
GCGAAAGAACTCATCCAATCCAGATTGAATTAAACGACTTCATAAAGACATTATTAGATGAAGATCTATCGGATGTTAAA
CATTCTATACAGCTTAAAATCTCTGATTCATCCTTAAAATTATTATTTGACGAGAAACAACTCAGACAAGTGCTGATTAA
CCTTGTCAGGAATGCCTTACGACATAATGCACCTGATTCACCCCATGTTCTGATCAACATTCACTCACAGACAAATAAAA
TCTATATTGATGTGATCGATTACGGCGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATACTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACGTATGTAGA
GCAAAAACAAGGGGCATGCTTCCGAATGGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-255)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

93.487

100

0.935

Multiple sequence alignment