Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACB088_RS10480 Genome accession   NZ_CP167121
Coordinates   2197577..2198284 (+) Length   235 a.a.
NCBI ID   WP_005041938.1    Uniprot ID   -
Organism   Acinetobacter sp. RW6     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2192577..2203284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB088_RS10460 (ACB088_10460) - 2195393..2196202 (+) 810 WP_375036901.1 peptidoglycan DD-metalloendopeptidase family protein -
  ACB088_RS10465 (ACB088_10465) - 2196199..2196624 (-) 426 WP_375036902.1 GNAT family N-acetyltransferase -
  ACB088_RS10470 (ACB088_10470) - 2196715..2197137 (-) 423 WP_004642007.1 OsmC family protein -
  ACB088_RS10475 (ACB088_10475) - 2197273..2197335 (-) 63 Protein_2058 hypothetical protein -
  ACB088_RS10480 (ACB088_10480) crp 2197577..2198284 (+) 708 WP_005041938.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACB088_RS10485 (ACB088_10485) - 2198444..2199493 (+) 1050 WP_003652689.1 NADP(H)-dependent aldo-keto reductase -
  ACB088_RS10490 (ACB088_10490) - 2199549..2200328 (-) 780 WP_133746482.1 M48 family metallopeptidase -
  ACB088_RS10495 (ACB088_10495) - 2200445..2200762 (-) 318 WP_375036903.1 hypothetical protein -
  ACB088_RS10500 (ACB088_10500) - 2200883..2202202 (-) 1320 WP_003652692.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26479.08 Da        Isoelectric Point: 4.6469

>NTDB_id=1038283 ACB088_RS10480 WP_005041938.1 2197577..2198284(+) (crp) [Acinetobacter sp. RW6]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDVSLEDAPVSDDDYDDDE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1038283 ACB088_RS10480 WP_005041938.1 2197577..2198284(+) (crp) [Acinetobacter sp. RW6]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCCCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCGAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGATGATGAACGTGAAATTGTTGTTGCATATTTGAATCCGGGCGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACTCGTGATGTCTGTGAAATTGCAGA
AATTTCTTATGACAACTTCCATGAACTTAGCAAACAATATCCAGACTTAAGTTATGCTGTTTTTGCACAACTCGTTCGCC
GTCTAAAAAATACAACCCGTAAAATGACAGATCTTGCATTTATCGATGTGTCTGGCCGTATTGCACGTTGTTTAATCGAC
CTATCTTCACAGCCAGAAGCAATGATTTTGCCAAATGGTCGTCAAATTCGTATTACTCGTCAAGAAATTGGCCGTATTGT
GGGTTGTTCACGTGAGATGGTTGGCCGTGTACTCAAAACCTTAGAAGATCAAGGCATGATCCAAACAGATGGTAAAGCCA
TTCTTATTTTTGATGTTTCATTAGAAGATGCACCTGTTTCTGATGACGACTATGATGATGACGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-219)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

97.021

100

0.97
  crp Vibrio cholerae strain A1552

48.223

83.83

0.404
  crp Haemophilus influenzae Rd KW20

48.705

82.128

0.4

Multiple sequence alignment