Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   ACB088_RS00865 Genome accession   NZ_CP167121
Coordinates   173665..178170 (+) Length   1501 a.a.
NCBI ID   WP_375037755.1    Uniprot ID   -
Organism   Acinetobacter sp. RW6     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 168665..183170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB088_RS00840 (ACB088_00840) - 169103..169741 (-) 639 WP_199990746.1 hypothetical protein -
  ACB088_RS00845 (ACB088_00845) pilG 170027..170410 (+) 384 WP_042897425.1 twitching motility response regulator PilG Regulator
  ACB088_RS00850 (ACB088_00850) - 170434..170796 (+) 363 WP_005036319.1 PleD family two-component system response regulator -
  ACB088_RS00855 (ACB088_00855) - 170856..171392 (+) 537 WP_005309806.1 chemotaxis protein CheW -
  ACB088_RS00860 (ACB088_00860) - 171435..173516 (+) 2082 WP_375037754.1 methyl-accepting chemotaxis protein -
  ACB088_RS00865 (ACB088_00865) chpA 173665..178170 (+) 4506 WP_375037755.1 Hpt domain-containing protein Regulator
  ACB088_RS00870 (ACB088_00870) - 178170..178637 (+) 468 WP_004639007.1 hypothetical protein -
  ACB088_RS00875 (ACB088_00875) dapE 178674..179810 (-) 1137 WP_056483376.1 succinyl-diaminopimelate desuccinylase -
  ACB088_RS00880 (ACB088_00880) - 179936..180079 (-) 144 WP_003655297.1 entericidin A/B family lipoprotein -
  ACB088_RS00885 (ACB088_00885) - 180198..181082 (-) 885 WP_375037756.1 DUF1853 family protein -
  ACB088_RS00890 (ACB088_00890) - 181187..181558 (+) 372 WP_375037757.1 YbaN family protein -
  ACB088_RS00895 (ACB088_00895) elsL 181676..182179 (+) 504 WP_375037758.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence


Protein


Download         Length: 1501 a.a.        Molecular weight: 171504.81 Da        Isoelectric Point: 4.4503

>NTDB_id=1038276 ACB088_RS00865 WP_375037755.1 173665..178170(+) (chpA) [Acinetobacter sp. RW6]
MKEILKTLTEAMMLPEDSYSQQDAEFLDIFVEEIEEIFVELQSLIHEWMQSKNVATLTEIRRHFHTLKGSGRMIAAKSSA
ELAWTVEDTLNRVINESLTLTPNVQQYVQLVFKFYFFKLVDDFKSKKEHAVDFRPLILLGQQLQQQQSLEPALEELLLLS
DTLTAETKTGLEVGDLEQESDNLTLETAVESEHNLAETLVLFMEEAEEHLATIDQFLEQEIHQHESYNALIRALHTLRGS
SAMAQVEAIFDASTKVEHLFKILLQEELSSHSEEILLLRDYRQFIRNCLDLLAAHCSNEQLDSNLKQFNQVWDAYMEQHG
EHASPLTPPHGLVSQLLQLDVSELLDAELDFEKGIRSEFPHYLERLSEQADLLLQHTQSQAMVGLYEYTNQLKDSYDVLL
DRPDLLHSDYVFEIYQKAHQQLIQLFDALAAGQRVSIIEQHQNILEELKLYTQYIPSLNSEPLESHQDVVESLFNADVEQ
TANEPSASIESILTDHVVMSQSVHLDRQFMFTEHVNRYFDPELLDIFLEEADELLEGIDTDLNIWVNDQENFAALNNLMR
YLHTLKGGANMIQANYIGLIAHELESIYERLIQRQLITSSALIDFIRLVQDDLADRLQIVREQHLDYAASHTIQALKNAG
KVYNSLGSAAKEMQAESETDVIPESSFEVLQQEAIHNTALNLDELTSNFEQIVESNIRLVEHTELQVFDAEGYTDSIQDQ
DIDSVVEQTFMEEAAELLEMADHLLKQWFEQRTNRSILLQLQRAVHSLKGGSRMVGLETVQAIAYQLENAFEKFALYHFS
SNIYDNLLESAIVWLKEAIFKQNYQHFDGLQQSLENIQFIETAIQIPSKLTRTDLFSTEPVMSFVQGDGAEPPPMMGAWE
QTQHLEQNNEMIRVSADLIEKMIDLSGENSINRSRIEMDLSQFGHTLVEMELAIQRLADQLRRMEGELESQIIAKHGIEH
SRYTEFDPLEMDQYSSLNQLSKSLAESASDLVDFKNTLSEKIRDTESLLVQQSRIQAEIQEGLMRTRLVPFSRLLPRLQR
IVRQTSTALDRPAELFVNNTEGELDRTMLERLVTPLEHMLRNAIDHGLEDRVQREQARKPETGRIELNIHRQGTDVVVTF
KDDGRGIDIEKVRQKALLSGLINSEQVLEHQDILQLIFHPGVSTADQVTQISGRGVGLDVVQSDIKALGGHVSVDSVYGQ
GTIFTIRVPTTVAVSDALMVKVADQQFAIPLAQIDRIVRVSPTSLEQYFGSAQEFFEFENKRYPLRYLSEFVGNQPIPRL
SGIMYSLPVLMIKTNNGQTIALLVDQLIGSRAQIVVKPIGQQFSSIGAIAGATILGDGQVCLILDGQNIARQIQSTRRHK
QLNEAIYRQRESDERRLIMIVDDSVTVRKVTTRLLERQGYDVVTAKDGIDAIEQLENIKPDLMLLDIEMPRMDGFEVLNL
VRHHDLHQDMPVIMITSRTGEKHRERAFTLGVNQYMGKPFQEEDLLHNIDAFFTIREEELA

Nucleotide


Download         Length: 4506 bp        

>NTDB_id=1038276 ACB088_RS00865 WP_375037755.1 173665..178170(+) (chpA) [Acinetobacter sp. RW6]
ATGAAAGAAATATTAAAAACTTTAACTGAAGCAATGATGCTACCGGAAGATAGCTATTCTCAACAAGATGCCGAATTTCT
TGATATCTTCGTTGAAGAAATTGAAGAAATTTTTGTTGAATTGCAATCTTTGATTCATGAATGGATGCAATCTAAAAATG
TTGCTACGCTGACTGAAATCCGTCGCCATTTTCATACCTTGAAAGGTTCGGGGCGAATGATTGCAGCGAAATCCTCTGCT
GAGCTTGCTTGGACTGTAGAAGATACGCTTAATCGGGTAATCAATGAGAGTCTCACATTAACTCCTAACGTCCAACAATA
TGTTCAGTTGGTATTTAAGTTCTATTTCTTTAAATTAGTAGATGACTTTAAATCTAAAAAGGAACATGCAGTAGATTTTA
GGCCTCTTATTTTATTGGGACAACAATTACAACAACAGCAAAGTTTAGAGCCTGCTTTAGAAGAACTTTTATTATTGTCG
GATACTCTCACTGCGGAAACTAAGACTGGTTTAGAGGTGGGTGATTTAGAACAGGAATCAGATAATTTAACTCTAGAAAC
TGCCGTAGAAAGTGAACATAACCTTGCTGAAACCTTAGTTTTATTTATGGAAGAAGCGGAGGAGCACTTAGCGACCATCG
ATCAGTTCTTAGAACAAGAAATACATCAGCATGAGAGTTACAATGCGCTAATCCGTGCATTACATACGTTGCGCGGCAGC
TCGGCAATGGCTCAGGTAGAAGCAATTTTTGATGCTAGTACTAAAGTTGAGCATTTATTTAAAATTCTATTACAAGAAGA
GCTATCTTCTCATTCAGAAGAAATTTTACTACTCCGTGATTACCGTCAGTTTATTCGAAATTGTTTAGATCTATTGGCTG
CGCATTGCTCTAATGAGCAATTAGACTCTAACCTGAAACAGTTCAATCAGGTTTGGGATGCTTATATGGAACAACATGGG
GAGCATGCGAGCCCGCTCACGCCTCCACATGGTTTAGTATCTCAGCTGTTACAGCTCGATGTTTCAGAATTACTTGATGC
AGAGTTAGATTTTGAGAAAGGAATTCGTTCTGAGTTCCCTCATTATCTTGAACGTTTAAGTGAACAGGCTGATTTGTTAT
TGCAACATACTCAGTCGCAGGCCATGGTTGGTTTATATGAATATACGAACCAGCTGAAAGATAGCTATGACGTATTGCTT
GATCGACCTGATTTATTACACTCAGATTATGTTTTTGAAATTTATCAGAAAGCACATCAACAATTAATTCAGTTATTTGA
TGCATTAGCTGCGGGTCAAAGAGTTAGTATTATTGAGCAACACCAAAATATTTTGGAAGAGCTAAAACTATATACCCAAT
ATATTCCAAGCCTTAATTCTGAACCATTAGAAAGTCATCAGGACGTTGTTGAGTCACTCTTTAATGCTGATGTAGAACAA
ACAGCAAATGAACCTTCAGCATCTATCGAAAGTATACTAACTGATCATGTAGTCATGAGCCAGAGTGTGCATTTAGATCG
CCAGTTCATGTTTACTGAGCACGTAAACCGTTATTTTGATCCAGAATTGTTAGATATTTTTCTTGAAGAAGCCGATGAGT
TGCTTGAAGGAATAGATACAGATCTTAATATTTGGGTTAATGATCAAGAGAACTTTGCTGCTCTTAATAATCTGATGCGC
TATTTGCATACCTTAAAAGGTGGGGCAAATATGATTCAGGCAAATTATATTGGTTTAATTGCACATGAACTAGAAAGTAT
TTATGAGCGCTTAATTCAAAGACAGTTAATTACTTCATCTGCTCTCATTGATTTTATCCGTCTGGTTCAAGATGATTTAG
CTGATCGCCTACAAATAGTACGTGAACAGCACCTAGATTATGCTGCTTCTCATACTATTCAAGCGCTTAAGAATGCAGGT
AAGGTATATAATTCACTCGGGTCTGCTGCTAAAGAGATGCAAGCAGAGTCTGAAACAGATGTTATACCGGAATCAAGTTT
TGAAGTATTACAACAAGAAGCTATACACAATACTGCGTTAAATCTCGATGAGTTAACTTCTAATTTTGAGCAGATTGTTG
AGTCTAATATTAGACTTGTTGAACACACAGAATTACAAGTTTTTGATGCAGAAGGCTATACAGACAGTATCCAAGATCAG
GATATTGACTCTGTTGTCGAGCAGACATTTATGGAGGAAGCGGCCGAGCTGTTAGAGATGGCCGATCACCTATTAAAGCA
GTGGTTCGAGCAGCGTACCAATCGTAGTATCTTGCTTCAGCTTCAAAGGGCAGTGCACAGCTTGAAAGGTGGTTCCCGTA
TGGTGGGACTTGAAACCGTACAAGCGATTGCTTATCAACTTGAAAACGCTTTTGAAAAATTTGCGCTTTATCATTTTAGC
TCAAATATTTATGACAACTTGCTAGAGAGTGCGATTGTTTGGTTAAAAGAAGCAATTTTCAAGCAAAATTATCAACATTT
TGATGGTTTACAACAAAGTTTAGAAAATATTCAGTTTATTGAAACTGCAATACAAATTCCAAGTAAGTTGACTAGAACTG
ATCTATTTAGTACTGAACCTGTAATGAGCTTCGTGCAAGGTGATGGGGCAGAACCACCACCAATGATGGGGGCATGGGAA
CAAACGCAGCATCTTGAACAAAATAATGAGATGATCCGGGTTTCGGCAGATTTAATTGAGAAAATGATTGATTTGTCTGG
TGAAAATTCGATTAACCGTTCACGAATTGAAATGGATCTAAGTCAATTTGGCCATACGTTAGTGGAAATGGAATTAGCCA
TTCAACGACTTGCAGATCAGTTACGTCGAATGGAAGGCGAATTAGAAAGCCAGATTATTGCAAAACACGGTATTGAGCAC
TCTCGTTATACAGAATTTGATCCTCTAGAGATGGACCAATATTCTTCATTGAATCAATTATCGAAATCACTTGCCGAATC
TGCATCGGATTTAGTGGATTTCAAAAATACATTATCTGAAAAAATCAGAGACACTGAAAGTTTGCTGGTACAGCAATCAC
GTATTCAGGCCGAAATTCAAGAAGGGCTAATGCGAACACGATTAGTACCATTTTCTCGATTGCTACCTCGTTTACAAAGA
ATTGTGAGGCAGACTTCTACTGCGTTGGATCGACCAGCAGAGCTTTTTGTTAATAATACCGAAGGTGAATTAGACCGGAC
AATGCTAGAACGTTTGGTTACTCCACTTGAGCACATGCTTCGAAATGCAATTGACCATGGTTTAGAAGATCGTGTGCAAC
GTGAACAAGCGCGAAAACCAGAAACTGGACGTATTGAACTGAATATTCATCGTCAAGGTACGGATGTTGTTGTTACATTT
AAGGATGATGGCCGAGGTATTGATATCGAGAAGGTCCGTCAAAAGGCCCTATTGTCTGGTTTGATTAATTCTGAGCAAGT
ATTAGAACATCAAGATATTTTACAGTTGATTTTCCATCCAGGGGTAAGTACGGCCGATCAAGTCACTCAGATTTCAGGTC
GTGGTGTAGGACTAGATGTTGTACAAAGTGATATTAAAGCTTTGGGCGGACATGTGAGTGTCGACTCTGTGTATGGGCAA
GGAACAATCTTTACAATACGCGTTCCAACCACAGTGGCTGTTAGTGATGCCTTAATGGTTAAAGTTGCTGATCAACAATT
TGCAATTCCTTTGGCTCAAATTGATCGAATTGTTCGAGTTTCACCAACATCATTAGAACAGTATTTTGGAAGTGCACAAG
AATTCTTTGAATTTGAAAATAAACGCTATCCATTACGCTATTTATCTGAGTTTGTTGGTAATCAACCAATTCCGCGTTTA
AGCGGGATAATGTATTCACTACCAGTATTAATGATTAAGACAAATAATGGACAAACAATTGCATTATTGGTTGATCAGCT
TATTGGTTCACGTGCGCAGATTGTGGTCAAGCCAATCGGGCAGCAGTTCTCTAGTATTGGTGCGATTGCAGGCGCAACTA
TTTTAGGTGATGGTCAAGTTTGTCTAATTCTAGATGGACAAAATATTGCTCGCCAAATTCAGTCTACCCGCCGACATAAG
CAGCTTAATGAAGCTATCTATAGACAACGTGAGTCTGATGAACGCCGTCTCATTATGATTGTAGATGACTCTGTCACAGT
CCGTAAGGTAACGACTCGTTTACTCGAACGTCAGGGCTATGACGTAGTCACTGCTAAAGATGGTATCGATGCAATTGAGC
AGTTGGAAAATATTAAACCAGATCTGATGCTGCTTGATATCGAAATGCCGCGAATGGATGGCTTTGAGGTACTTAACCTC
GTACGACATCATGATCTACATCAAGATATGCCAGTCATTATGATTACATCTAGGACTGGCGAAAAACACCGTGAACGAGC
ATTTACTTTAGGGGTTAACCAATACATGGGTAAACCTTTCCAAGAAGAAGACTTACTTCACAATATTGATGCTTTTTTCA
CGATACGTGAAGAGGAACTTGCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

79.258

100

0.797


Multiple sequence alignment