Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QNH65_RS07380 Genome accession   NZ_OX352940
Coordinates   1506504..1507094 (-) Length   196 a.a.
NCBI ID   WP_011921679.1    Uniprot ID   A0A0H3N1H3
Organism   Streptococcus suis isolate 861160_LM_A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1501504..1512094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH65_RS07355 - 1501792..1502058 (-) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  QNH65_RS07360 spx 1502158..1502556 (-) 399 WP_002939362.1 transcriptional regulator Spx -
  QNH65_RS07365 recA 1502792..1503940 (-) 1149 WP_023369045.1 recombinase RecA Machinery gene
  QNH65_RS07370 cinA 1503992..1505173 (-) 1182 WP_023369043.1 competence/damage-inducible protein A Machinery gene
  QNH65_RS07375 - 1505210..1505779 (-) 570 WP_012774893.1 DNA-3-methyladenine glycosylase I -
  QNH65_RS07380 ruvA 1506504..1507094 (-) 591 WP_011921679.1 Holliday junction branch migration protein RuvA Machinery gene
  QNH65_RS07385 hexB 1507133..1509070 (-) 1938 WP_012774891.1 DNA mismatch repair endonuclease MutL Machinery gene
  QNH65_RS07390 - 1509188..1510711 (-) 1524 WP_024405860.1 quinol oxidase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21739.10 Da        Isoelectric Point: 5.0800

>NTDB_id=1037962 QNH65_RS07380 WP_011921679.1 1506504..1507094(-) (ruvA) [Streptococcus suis isolate 861160_LM_A]
MYDYIKGILTKITAKYIVVETQGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALEEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1037962 QNH65_RS07380 WP_011921679.1 1506504..1507094(-) (ruvA) [Streptococcus suis isolate 861160_LM_A]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATACATTGTGGTAGAAACGCAAGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTCCAGCAAGAAGTGACTGTCTATACTCATCAGGTGATTCGTG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATCGAGCAGAAAAACATTAC
CTACCTGACCAAATTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCCCTTGAAGAAGCCATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAACGACACCGCAGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N1H3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

76.142

100

0.765
  ruvA Streptococcus pneumoniae D39

76.142

100

0.765
  ruvA Streptococcus pneumoniae TIGR4

76.142

100

0.765
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408