Detailed information    

insolico Bioinformatically predicted

Overview


Name   comYF   Type   Machinery gene
Locus tag   ACB340_RS00675 Genome accession   NZ_CP167005
Coordinates   104905..105339 (+) Length   144 a.a.
NCBI ID   WP_002992738.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 27     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 99905..110339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB340_RS00645 (ACB340_00645) - 101573..101938 (+) 366 WP_002986560.1 DUF1033 family protein -
  ACB340_RS00650 (ACB340_00650) comGA 102031..102970 (+) 940 Protein_79 competence type IV pilus ATPase ComGA -
  ACB340_RS00655 (ACB340_00655) comYB 102906..103940 (+) 1035 WP_011054115.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACB340_RS00660 (ACB340_00660) comYC 103942..104268 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  ACB340_RS00665 (ACB340_00665) comGD 104243..104671 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD -
  ACB340_RS00670 (ACB340_00670) comGE 104628..104912 (+) 285 WP_032465969.1 competence type IV pilus minor pilin ComGE -
  ACB340_RS00675 (ACB340_00675) comYF 104905..105339 (+) 435 WP_002992738.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACB340_RS00680 (ACB340_00680) comGG 105323..105649 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  ACB340_RS00685 (ACB340_00685) comYH 105747..106700 (+) 954 WP_010921802.1 class I SAM-dependent methyltransferase Machinery gene
  ACB340_RS00690 (ACB340_00690) - 106759..107955 (+) 1197 WP_023078999.1 acetate kinase -
  ACB340_RS00695 (ACB340_00695) - 108141..108449 (+) 309 WP_030126458.1 hypothetical protein -
  ACB340_RS00700 (ACB340_00700) proC 108532..109302 (-) 771 WP_023078993.1 pyrroline-5-carboxylate reductase -

Sequence


Protein


Download         Length: 144 a.a.        Molecular weight: 16645.27 Da        Isoelectric Point: 10.2526

>NTDB_id=1037072 ACB340_RS00675 WP_002992738.1 104905..105339(+) (comYF) [Streptococcus pyogenes strain Isolate 27]
MSKQLSNIKAFTLLEALIALLVISGSLLVYQGLTQTLLKRSHYLARHDQDNWLLFSHQLREELSGARFYKVADNKLYVEK
GKKVLAFGQFKSHDFRKSASNGKGYQPMLFGISRSHIHIEQSQICITLKWKSGLERTFYYAFQD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1037072 ACB340_RS00675 WP_002992738.1 104905..105339(+) (comYF) [Streptococcus pyogenes strain Isolate 27]
TTGAGTAAACAATTAAGTAACATAAAAGCTTTTACCCTTCTAGAGGCGTTAATAGCCTTACTCGTGATATCAGGGTCTTT
ATTGGTTTATCAAGGTTTGACCCAAACCCTCCTTAAACGTAGCCATTATCTAGCCCGTCATGATCAAGACAATTGGCTCT
TATTTTCTCATCAATTGCGAGAGGAGTTAAGTGGAGCAAGATTTTACAAAGTAGCTGATAATAAACTATACGTTGAAAAA
GGAAAGAAAGTACTAGCTTTTGGCCAATTTAAAAGTCATGATTTCCGAAAATCAGCTAGTAATGGAAAAGGGTATCAACC
CATGTTATTTGGAATATCACGTAGTCATATTCACATAGAGCAGTCACAGATTTGCATTACTTTAAAGTGGAAAAGTGGGT
TAGAAAGGACTTTTTATTATGCCTTTCAAGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

51.079

96.528

0.493

  comYF Streptococcus mutans UA159

50.36

96.528

0.486

  comGF Lactococcus lactis subsp. cremoris KW2

46.715

95.139

0.444

  comGF/cglF Streptococcus mitis NCTC 12261

44.776

93.056

0.417

  comGF/cglF Streptococcus pneumoniae Rx1

43.609

92.361

0.403

  comGF/cglF Streptococcus pneumoniae D39

43.609

92.361

0.403

  comGF/cglF Streptococcus pneumoniae R6

43.609

92.361

0.403

  comGF/cglF Streptococcus pneumoniae TIGR4

43.609

92.361

0.403

  comGF/cglF Streptococcus mitis SK321

42.857

92.361

0.396


Multiple sequence alignment