Detailed information NTG0103653

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: KHU1_RS11565
• Genome accession: NZ_CP007242
• Coordinates: 2453200..2453805 (-)
• Length: 201 a.a.
• NCBI ID: WP_003152683.1
• Uniprot ID: A7Z769
• Organism: Bacillus amyloliquefaciens KHG19
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2448200..2458805

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHU1_RS11530 (KHU1_2264)	-	2448213..2448869 (-)	657	WP_003152699.1	DUF421 domain-containing protein	-
KHU1_RS11535 (KHU1_2265)	-	2449036..2449422 (+)	387	WP_032866621.1	TIGR04086 family membrane protein	-
KHU1_RS11540 (KHU1_2266)	yajC	2449474..2449734 (-)	261	WP_003152695.1	preprotein translocase subunit YajC	-
KHU1_RS11545 (KHU1_2267)	tgt	2449765..2450910 (-)	1146	WP_007408186.1	tRNA guanosine(34) transglycosylase Tgt	-
KHU1_RS11550 (KHU1_2268)	queA	2450938..2451966 (-)	1029	WP_003152692.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
KHU1_RS11555 (KHU1_2269)	-	2451992..2452192 (-)	201	WP_003152687.1	DUF2905 domain-containing protein	-
KHU1_RS11560 (KHU1_2270)	ruvB	2452185..2453189 (-)	1005	WP_007408185.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
KHU1_RS11565 (KHU1_2271)	ruvA	2453200..2453805 (-)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
KHU1_RS11570 (KHU1_2272)	-	2453940..2454449 (-)	510	WP_007408184.1	intercompartmental signaling factor BofC	-
KHU1_RS20400	-	2454582..2454701 (-)	120	WP_007612850.1	hypothetical protein	-
KHU1_RS11580 (KHU1_2273)	-	2454835..2455428 (-)	594	WP_042635389.1	YhcN/YlaJ family sporulation lipoprotein	-
KHU1_RS11585 (KHU1_2274)	safA	2455577..2456764 (-)	1188	WP_042635390.1	SafA/ExsA family spore coat assembly protein	-
KHU1_RS11590 (KHU1_2275)	nadA	2456891..2457994 (-)	1104	WP_032866610.1	quinolinate synthase NadA	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22414.85 Da
• Isoelectric Point: 5.1597

>NTDB_id=103653 KHU1_RS11565 WP_003152683.1 2453200..2453805(-) (ruvA) [Bacillus amyloliquefaciens KHG19]
MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL
EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=103653 KHU1_RS11565 WP_003152683.1 2453200..2453805(-) (ruvA) [Bacillus amyloliquefaciens KHG19]
GTGATTGAATTCGTGAAGGGGACGATTGATTATGTATCTCCCCAATACATCGTGATTGAAAACGGCGGAATCGGCTATCA
GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGATG
CCTTTTCTTTGTACGGTTTTTCAACCCGGGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAACGTCACCGGCATCGGGCCG
AAAGGGGCGCTCGCCATCCTCGGCTCCGGTGATCCCGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT
GGTGAAATTTCCGGGTGTGGGCAAAAAAACGGCGCGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGACGTCGTGC
CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGACGAGGCGCTT
GAAGCGCTCCGGGTTCTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC
AACAGATCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: A7Z769

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408