Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACA097_RS17455 Genome accession   NZ_CP166971
Coordinates   3725257..3726594 (-) Length   445 a.a.
NCBI ID   WP_043255030.1    Uniprot ID   A0A024HNN1
Organism   Pseudomonas sp. QL9     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3720257..3731594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA097_RS17425 (ACA097_17420) - 3721039..3721503 (-) 465 WP_371364787.1 PilX N-terminal domain-containing pilus assembly protein -
  ACA097_RS17430 (ACA097_17425) - 3721500..3722192 (-) 693 WP_371364789.1 PilW family protein -
  ACA097_RS17435 (ACA097_17430) pilV 3722189..3722677 (-) 489 WP_371364792.1 type IV pilus modification protein PilV -
  ACA097_RS17440 (ACA097_17435) - 3722668..3723195 (-) 528 WP_371364794.1 GspH/FimT family pseudopilin -
  ACA097_RS17445 (ACA097_17440) - 3723347..3723859 (-) 513 WP_371364796.1 GspH/FimT family pseudopilin -
  ACA097_RS17450 (ACA097_17445) thiO 3724037..3725146 (+) 1110 WP_371364798.1 glycine oxidase ThiO -
  ACA097_RS17455 (ACA097_17450) pilR 3725257..3726594 (-) 1338 WP_043255030.1 sigma-54 dependent transcriptional regulator Regulator
  ACA097_RS17460 (ACA097_17455) pilS 3726611..3728200 (-) 1590 WP_371364800.1 PAS domain-containing sensor histidine kinase Regulator
  ACA097_RS17465 (ACA097_17460) - 3728193..3728423 (-) 231 WP_043255028.1 PP0621 family protein -
  ACA097_RS17470 (ACA097_17465) - 3728566..3729582 (-) 1017 WP_043255027.1 outer membrane protein assembly factor BamD -
  ACA097_RS17475 (ACA097_17470) rluD 3729730..3730689 (+) 960 WP_043255025.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACA097_RS17480 (ACA097_17475) pgeF 3730686..3731414 (+) 729 WP_371364803.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49621.83 Da        Isoelectric Point: 5.8207

>NTDB_id=1036481 ACA097_RS17455 WP_043255030.1 3725257..3726594(-) (pilR) [Pseudomonas sp. QL9]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNIKEAREYLAREPFDLCLTDMRLPDGTGMDLVQHIQQRHPQVPVAM
ITAFGSLDTAVNALKAGAFDFVTKPVDLGRLRELVATALRLRSPSAEEAPVDNRLLGESPPMKQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEVAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVSVDVRVLSATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTDRV
LQRLASDSGLAPAKVSADALEKLKSYRFPGNVRELENMLERAYTLCEDDLIQPHDLRFAETASGGESGEASLAQIDNLED
YLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1036481 ACA097_RS17455 WP_043255030.1 3725257..3726594(-) (pilR) [Pseudomonas sp. QL9]
ATGAGCCGGCAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCATGAA
GCTCGATACCCGCAGCGCCCGCAACATCAAGGAAGCGCGCGAGTACCTGGCCCGCGAACCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCATGGACCTGGTGCAGCACATCCAGCAGCGCCACCCACAGGTACCGGTGGCCATG
ATTACCGCCTTTGGCAGCCTGGATACCGCGGTCAACGCGCTCAAGGCCGGCGCCTTCGACTTCGTCACCAAGCCGGTCGA
CCTCGGCCGCCTGCGCGAACTGGTCGCCACCGCGTTGCGCCTGCGTTCGCCGAGCGCCGAAGAAGCACCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGAAGCAGATGCGCAACCAGATCGCCAAGCTCGCGCGCAGCCAGGCGCCGGTGTAC
ATCAGCGGCGAATCGGGTAGCGGCAAGGAGTTGGTGGCACGGCTGATCCACGAACAAGGCCCACGCAGCGAAGTGGCCTT
CGTCCCGGTCAACTGCGGCGCCATCCCGTCAGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAAGACAAGCAGGGCCTGTTCCAGGCGGCCAACGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
CTGCCGATGCAAGTCAAGCTGCTGCGCGCCATCCAGGAGAAGGCCGTACGCGCGGTCGGTGGCCAGCAGGAAGTGTCGGT
CGACGTGCGCGTGCTCAGCGCGACACACAAGGACCTCGCTGCAGAAGTCGCCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGAGGATATTCCGCTGCTCACCGATCGCGTG
CTGCAGCGCCTGGCCAGCGATAGCGGCCTGGCGCCGGCGAAGGTCAGCGCCGATGCGCTGGAAAAGCTGAAGAGCTACCG
TTTCCCCGGCAACGTACGCGAACTGGAGAACATGCTCGAGCGCGCCTACACGCTGTGCGAGGACGACCTCATCCAGCCGC
ACGACCTGCGCTTCGCGGAAACCGCGAGTGGCGGCGAAAGCGGCGAAGCCAGCCTGGCGCAGATCGACAACCTCGAAGAC
TACCTGGAAGAGATCGAACGCAAGCTGATCATGCAGGCACTCGAGGAAACCCGCTGGAACCGCACTGCGGCCGCCCAGCG
TCTGGGCCTGACCTTCCGCTCCATGCGCTACCGGCTGAAGAAGCTCGGTATCGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A024HNN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

87.64

100

0.876
  pilR Acinetobacter baumannii strain A118

50.109

100

0.517

Multiple sequence alignment