Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LQ179_RS19275 Genome accession   NZ_OW967003
Coordinates   4009846..4010322 (+) Length   158 a.a.
NCBI ID   WP_001360063.1    Uniprot ID   -
Organism   Escherichia coli isolate 624     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4004846..4015322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ179_RS19255 (AI2834V1_3709) - 4005195..4008041 (+) 2847 WP_021520252.1 Ag43/Cah family autotransporter adhesin -
  LQ179_RS19260 (AI2834V1_3710) - 4008112..4008345 (+) 234 WP_001117566.1 DUF905 family protein -
  LQ179_RS19265 (AI2834V1_3711) - 4008435..4009253 (+) 819 WP_001234397.1 DUF932 domain-containing protein -
  LQ179_RS19270 (AI2834V1_3712) - 4009345..4009830 (+) 486 WP_139496173.1 antirestriction protein -
  LQ179_RS19275 (AI2834V1_3713) radC 4009846..4010322 (+) 477 WP_001360063.1 RadC family protein Machinery gene
  LQ179_RS19280 (AI2834V1_3714) - 4010409..4010630 (+) 222 WP_000692176.1 DUF987 domain-containing protein -
  LQ179_RS19285 (AI2834V1_3715) - 4010710..4011078 (+) 369 WP_001285576.1 type IV toxin-antitoxin system YeeU family antitoxin -
  LQ179_RS19290 (AI2834V1_3716) - 4011168..4011545 (+) 378 WP_000854722.1 TA system toxin CbtA family protein -
  LQ179_RS19295 (AI2834V1_3717) - 4011542..4012030 (+) 489 WP_000761669.1 DUF5983 family protein -
  LQ179_RS19300 (AI2834V1_3718) - 4012050..4012247 (+) 198 WP_000445281.1 DUF957 domain-containing protein -
  LQ179_RS19305 (AI2834V1_3719) - 4012332..4013177 (+) 846 WP_001280427.1 DUF4942 domain-containing protein -
  LQ179_RS19315 (AI2834V1_3720) mug 4013477..4013983 (+) 507 WP_000228937.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17644.24 Da        Isoelectric Point: 7.0394

>NTDB_id=1036482 LQ179_RS19275 WP_001360063.1 4009846..4010322(+) (radC) [Escherichia coli isolate 624]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALHHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1036482 LQ179_RS19275 WP_001360063.1 4009846..4010322(+) (radC) [Escherichia coli isolate 624]
ATGCAGCAGCTTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACTCTGGA
CCGTCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGCACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCATCCGTCCGGTGAAGTCACACCCAGTAAGGCTGACCGCCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TTGACATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38

Multiple sequence alignment