Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACA097_RS17460 Genome accession   NZ_CP166971
Coordinates   3726611..3728200 (-) Length   529 a.a.
NCBI ID   WP_371364800.1    Uniprot ID   -
Organism   Pseudomonas sp. QL9     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3721611..3733200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA097_RS17435 (ACA097_17430) pilV 3722189..3722677 (-) 489 WP_371364792.1 type IV pilus modification protein PilV -
  ACA097_RS17440 (ACA097_17435) - 3722668..3723195 (-) 528 WP_371364794.1 GspH/FimT family pseudopilin -
  ACA097_RS17445 (ACA097_17440) - 3723347..3723859 (-) 513 WP_371364796.1 GspH/FimT family pseudopilin -
  ACA097_RS17450 (ACA097_17445) thiO 3724037..3725146 (+) 1110 WP_371364798.1 glycine oxidase ThiO -
  ACA097_RS17455 (ACA097_17450) pilR 3725257..3726594 (-) 1338 WP_043255030.1 sigma-54 dependent transcriptional regulator Regulator
  ACA097_RS17460 (ACA097_17455) pilS 3726611..3728200 (-) 1590 WP_371364800.1 PAS domain-containing sensor histidine kinase Regulator
  ACA097_RS17465 (ACA097_17460) - 3728193..3728423 (-) 231 WP_043255028.1 PP0621 family protein -
  ACA097_RS17470 (ACA097_17465) - 3728566..3729582 (-) 1017 WP_043255027.1 outer membrane protein assembly factor BamD -
  ACA097_RS17475 (ACA097_17470) rluD 3729730..3730689 (+) 960 WP_043255025.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACA097_RS17480 (ACA097_17475) pgeF 3730686..3731414 (+) 729 WP_371364803.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58487.60 Da        Isoelectric Point: 6.9193

>NTDB_id=1036482 ACA097_RS17460 WP_371364800.1 3726611..3728200(-) (pilS) [Pseudomonas sp. QL9]
MAKAIPLSGQQGQRILRLYHLYRLSIGLALVLLISSNLDNHILAPRDIELFHIGCWGYLIINILIAVLMPSPRQLLPIFC
IALLDILLLCGLFFAAGGVPSGVGNLLVVAVAIANILLRGRIGLLIAAVAAIGMIYLTFYLSLSQPSAVNHYLQVGGLGA
LCFAAALLLQGLTRRQQLSDSLAEERATTVANLQELNAQILQRMRTGILVLDSQQRILLANQSAHSLLAESELAARRLAT
YSQDLLDSLQQWSQNPSLRPPSIQAPDSGPTLQPSFIPLRHGEEQHTLVFLEDISQIAQQAQQLKLAALGRLTAGIAHEI
RNPLGAISHAAQLLLESEALDAPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLQRFSDELRESLRPDQ
QIHVQMGEGSIQTRMDPNQLTQVLGNLVQNGLRYSAKQHGKGQVWLNLFRDSDSDLPVLEVLDDGPGIAEEQLGKLFEPF
FTTESKGTGLGLYISRELCESNQARIDFKNRDEGGGCFRITFAHPLKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1036482 ACA097_RS17460 WP_371364800.1 3726611..3728200(-) (pilS) [Pseudomonas sp. QL9]
ATGGCTAAGGCCATCCCGCTCAGCGGCCAGCAGGGGCAGCGCATCCTTCGCCTGTACCACCTGTACCGCCTGAGCATCGG
CCTGGCGTTGGTGCTGCTGATTTCCAGCAACCTCGACAACCACATCCTGGCGCCCCGCGACATCGAGCTATTCCACATCG
GCTGCTGGGGCTACCTGATCATCAATATCCTGATCGCCGTGCTGATGCCGTCGCCGCGCCAGCTGCTGCCGATCTTCTGC
ATAGCGCTGCTCGACATTCTCCTGCTCTGCGGCCTGTTCTTCGCCGCCGGCGGGGTGCCTAGCGGGGTCGGCAACCTGCT
GGTGGTGGCCGTAGCTATCGCCAATATCCTGCTGCGCGGGCGCATCGGCCTGCTTATCGCCGCGGTCGCCGCGATCGGCA
TGATCTACCTGACCTTCTACCTGAGCCTCAGCCAACCGTCGGCGGTCAACCATTACCTGCAGGTCGGCGGCCTGGGCGCC
TTGTGCTTCGCCGCTGCCCTGTTGCTACAGGGCCTGACCCGCCGCCAACAACTCAGCGACTCGCTCGCCGAGGAGCGCGC
CACCACCGTGGCCAACCTGCAGGAGCTCAACGCACAGATCCTCCAGCGCATGCGTACCGGCATCCTGGTACTCGACAGCC
AGCAGCGCATCCTGCTGGCCAACCAGAGTGCGCACAGCCTGCTGGCGGAGTCGGAACTCGCCGCGCGACGCCTCGCTACC
TACAGCCAGGACCTGCTCGACAGCCTGCAGCAATGGTCGCAGAACCCCTCGCTGCGCCCACCCAGCATCCAGGCCCCGGA
CAGCGGCCCCACGCTGCAGCCGAGCTTCATTCCGCTGCGCCATGGCGAAGAGCAGCACACCCTGGTCTTCCTCGAAGACA
TCTCGCAGATCGCCCAGCAGGCACAACAACTCAAGCTTGCGGCGCTCGGCCGGCTAACTGCCGGGATCGCCCACGAAATC
CGCAATCCGCTGGGCGCAATCAGCCATGCCGCACAACTGCTGCTCGAGTCCGAAGCGCTGGACGCTCCCGACCGCAGGCT
GACGCAAATCATCCAGGACCAGTCGCGGCGCATGAACCTGGTAATCGAGAACGTCCTGCAACTGTCGCGGCGGCGCCAGG
CGGAGCCGCAACTGCTCGACCTCAAGTACTGGCTGCAGCGTTTCAGCGACGAGTTGCGCGAAAGCCTGCGACCGGACCAG
CAGATCCACGTGCAAATGGGCGAAGGCAGCATCCAGACGCGCATGGACCCGAACCAGCTCACGCAGGTGCTCGGCAATCT
GGTGCAGAATGGCCTGCGCTACAGCGCCAAGCAGCACGGCAAGGGCCAGGTGTGGCTGAATCTGTTCCGCGACAGCGACA
GCGACCTGCCCGTCCTCGAGGTGCTCGACGACGGTCCCGGCATAGCGGAGGAGCAGTTGGGCAAGCTGTTCGAGCCCTTC
TTCACTACCGAGAGCAAGGGGACCGGCCTCGGCCTGTACATTTCCAGGGAACTGTGCGAAAGCAACCAGGCCCGCATCGA
CTTCAAGAACCGCGACGAGGGCGGTGGCTGCTTCCGCATCACCTTCGCCCACCCGCTCAAGCAAAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

71.402

99.811

0.713

Multiple sequence alignment