Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ACA346_RS03210 Genome accession   NZ_CP166970
Coordinates   629886..630689 (+) Length   267 a.a.
NCBI ID   WP_418127151.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NX1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 624886..635689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA346_RS03185 (ACA346_03185) - 625304..626002 (-) 699 WP_418127148.1 amino acid ABC transporter permease -
  ACA346_RS03190 (ACA346_03190) - 626016..626855 (-) 840 WP_418127149.1 transporter substrate-binding domain-containing protein -
  ACA346_RS03195 (ACA346_03195) - 626865..627626 (-) 762 WP_418127150.1 amino acid ABC transporter ATP-binding protein -
  ACA346_RS03200 (ACA346_03200) micA 627833..628537 (+) 705 WP_024391260.1 response regulator YycF Regulator
  ACA346_RS03205 (ACA346_03205) micB 628530..629879 (+) 1350 WP_217469406.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ACA346_RS03210 (ACA346_03210) vicX 629886..630689 (+) 804 WP_418127151.1 MBL fold metallo-hydrolase Regulator
  ACA346_RS03215 (ACA346_03215) pbp2b 631009..633042 (+) 2034 WP_418127523.1 penicillin-binding protein PBP2B -
  ACA346_RS03220 (ACA346_03220) recR 633051..633647 (+) 597 WP_172036408.1 recombination mediator RecR -
  ACA346_RS03225 (ACA346_03225) - 633756..634802 (+) 1047 WP_277836762.1 D-alanine--D-alanine ligase -
  ACA346_RS03230 (ACA346_03230) - 634915..635295 (+) 381 WP_171988533.1 OsmC family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29610.63 Da        Isoelectric Point: 5.7692

>NTDB_id=1036428 ACA346_RS03210 WP_418127151.1 629886..630689(+) (vicX) [Streptococcus parasuis strain NX1]
MIGTGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPDDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGSMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
KNADAYLIESNHDVEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTTKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGTDFQIYDTSPDTATVLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1036428 ACA346_RS03210 WP_418127151.1 629886..630689(+) (vicX) [Streptococcus parasuis strain NX1]
ATGATCGGAACTGGTTTTAATTATAGTATTTTAGCATCCGGGTCTAGTGGAAATTGTTTTTATTTGGAAACGGATAAAAA
GAAAATTTTAGTGGATGCAGGTTTATCGGGAAAAAAAATCACTAGTCTTTTGGCAGAAATTGACCGAAAACCAGATGATA
TTGATGCCATTTTAGTCACCCATGAACATAGCGATCATATCCATGGTATAGGAGTGTTAGCTCGTAAATATGGTATGGAT
ATTTATGCCAATGAATTGACCTGGCAGGCAATGGAAAGCAAGCTGGGCAAAATTGATGTCGCCCAAAAACACATTTTTGA
ATTGGGCTCAATGAAAACTTTTGGAGACCTGGATATTGAGTCATTTGGTGTCAGCCACGATGCTGCTTGTCCGCAGTTCT
ACCGCTTTATGAAAGATGATAAATCCTTTGTTATGTTGACGGATACTGGTTATGTTAGTGACCGAATGGTGGGTATTGTG
AAAAATGCAGATGCCTATTTGATTGAATCCAATCATGATGTTGAAATCCTTCGTTCGGGTTCTTATTCTTGGAATTTGAA
GCAACGGATTTTGTCGGATAAAGGGCATCTTTGTAACGAAGATGGTGCAGATGCCATGATTCGTTCGCTCGGAAATCGGA
CCACTAAGATTTACCTAGGGCATCTATCAAAGGAAAATAATATCAAGGAACTGGCACATATGACTATGGTTAACCAATTG
GCACAAGCTGATTTAGGTGTTGGTACAGATTTTCAAATTTATGATACTTCGCCAGATACAGCGACTGTATTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768

Multiple sequence alignment