Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACA346_RS02030 Genome accession   NZ_CP166970
Coordinates   387321..387815 (+) Length   164 a.a.
NCBI ID   WP_418127033.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NX1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 382321..392815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA346_RS02005 (ACA346_02005) - 383137..383736 (+) 600 Protein_352 histidine phosphatase family protein -
  ACA346_RS02010 (ACA346_02010) - 383748..384350 (+) 603 WP_418127031.1 histidine phosphatase family protein -
  ACA346_RS02015 (ACA346_02015) - 384365..385804 (+) 1440 WP_418127032.1 6-phospho-beta-glucosidase -
  ACA346_RS02020 (ACA346_02020) - 385888..386877 (+) 990 WP_277836864.1 lipoate--protein ligase -
  ACA346_RS02025 (ACA346_02025) rpsF 387019..387309 (+) 291 WP_171989335.1 30S ribosomal protein S6 -
  ACA346_RS02030 (ACA346_02030) ssb 387321..387815 (+) 495 WP_418127033.1 single-stranded DNA-binding protein Machinery gene
  ACA346_RS02035 (ACA346_02035) rpsR 387848..388087 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  ACA346_RS02040 (ACA346_02040) - 388544..389200 (-) 657 WP_418127035.1 DUF1129 domain-containing protein -
  ACA346_RS02045 (ACA346_02045) - 389215..390159 (-) 945 WP_172036237.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18159.92 Da        Isoelectric Point: 4.7294

>NTDB_id=1036421 ACA346_RS02030 WP_418127033.1 387321..387815(+) (ssb) [Streptococcus parasuis strain NX1]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGSGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGANNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1036421 ACA346_RS02030 WP_418127033.1 387321..387815(+) (ssb) [Streptococcus parasuis strain NX1]
ATGATTAATAATGTAGTATTGGTTGGTCGCATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAACCAGGCTGTTGC
GACTTTTACCTTGGCGGTTAACCGCAATTTTAAAAATCAAAATGGTGAACGTGAAGCGGACTTTATTAACGTAGTCATTT
GGCGCCAACAAGCTGAAAATTTGGCGAATTGGGCTAAGAAAGGTGCGCTGATTGGTGTTACAGGTCGTATTCAGACTCGT
AGCTATGATAACCAACAGGGGCAACGTGTCTACGTTACAGAGGTAGTTGCAGAAAGTTTCCAACTATTGGAAAGCCGTAC
TGCCCGTGAAGGCCAAGGGAGCGGTTATTCAGCTGGTAATTCCTTTGCTGGTGGCAATGATTATAACTCGCCTTATCAAG
CGCCTGCGCAATCTACACCGAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAACAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

100

0.604
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366

Multiple sequence alignment