Detailed information NTG1036368

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB9N64_RS22285
• Genome accession: NZ_CP166962
• Coordinates: 4835368..4836234 (-)
• Length: 288 a.a.
• NCBI ID: WP_371359664.1
• Uniprot ID: -
• Organism: Pseudomonas sp. KT_2_4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4830368..4841234

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB9N64_RS22250 (AB9N64_22245)	-	4831239..4832537 (-)	1299	WP_014716868.1	NAD(P)/FAD-dependent oxidoreductase	-
AB9N64_RS22255 (AB9N64_22250)	-	4832598..4832771 (-)	174	WP_014716869.1	DUF3094 family protein	-
AB9N64_RS22260 (AB9N64_22255)	-	4832826..4833455 (-)	630	WP_003188431.1	DUF1780 domain-containing protein	-
AB9N64_RS22265 (AB9N64_22260)	-	4833585..4834274 (+)	690	WP_038448869.1	energy-coupling factor ABC transporter permease	-
AB9N64_RS22270 (AB9N64_22265)	-	4834339..4834554 (+)	216	WP_003171680.1	hypothetical protein	-
AB9N64_RS22275 (AB9N64_22270)	yacG	4834551..4834751 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
AB9N64_RS22280 (AB9N64_22275)	coaE	4834748..4835371 (-)	624	WP_032903992.1	dephospho-CoA kinase	-
AB9N64_RS22285 (AB9N64_22280)	pilD	4835368..4836234 (-)	867	WP_371359664.1	A24 family peptidase	Machinery gene
AB9N64_RS22290 (AB9N64_22285)	pilC	4836231..4837439 (-)	1209	WP_019816978.1	type II secretion system F family protein	Machinery gene
AB9N64_RS22295 (AB9N64_22290)	-	4837641..4838054 (+)	414	WP_014716874.1	pilin	-
AB9N64_RS22305 (AB9N64_22300)	-	4838344..4838649 (+)	306	WP_014716875.1	DUF6388 family protein	-
AB9N64_RS22310 (AB9N64_22305)	nadC	4838699..4839547 (-)	849	WP_014716876.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31768.97 Da
• Isoelectric Point: 7.0537

>NTDB_id=1036368 AB9N64_RS22285 WP_371359664.1 4835368..4836234(-) (pilD) [Pseudomonas sp. KT_2_4]
MSLLLSEHPWAFVGLALVLGLIVGSFLNVLAWRLPKMLEREWRAQAHEILDLPAEPGGPAYNLMRPNSCCPRCDQPIRPW
ENIPVLSYLLLRGHCAHCREPIGLRYPLTELACALISTAVAWHFGFGWQAGAVMLLSWGLLGMSLIDLDHQLLPDVLVLP
LLWLGLILNSADLLTPLSDAVWGAVIGYMSLWCLFWLFKMATGRDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVL
AGLILLRLRKAQVSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=1036368 AB9N64_RS22285 WP_371359664.1 4835368..4836234(-) (pilD) [Pseudomonas sp. KT_2_4]
TTGAGCCTGCTGCTGAGCGAACATCCCTGGGCGTTTGTTGGCCTGGCGCTGGTGTTGGGCCTGATCGTCGGCAGCTTCCT
CAATGTGCTGGCGTGGCGCCTGCCCAAAATGCTCGAGCGGGAATGGCGTGCCCAGGCCCATGAGATTCTCGACTTGCCAG
CCGAGCCCGGTGGGCCGGCCTATAACCTGATGCGTCCGAACTCCTGCTGCCCGCGCTGCGATCAACCGATTCGGCCTTGG
GAAAATATCCCGGTGCTCAGCTACCTGTTGCTCCGGGGGCATTGTGCCCACTGCCGTGAGCCCATCGGCCTGCGTTACCC
CCTCACCGAACTCGCGTGCGCGCTGATCTCAACCGCTGTCGCCTGGCACTTCGGCTTCGGCTGGCAAGCCGGCGCGGTGA
TGCTGTTGAGTTGGGGCTTGCTGGGCATGAGCCTGATTGATCTGGACCACCAACTGCTGCCGGATGTGCTGGTGCTGCCG
CTGCTATGGCTGGGGCTGATCCTCAACAGTGCTGACCTGTTGACGCCACTGTCCGATGCAGTGTGGGGCGCGGTTATCGG
CTACATGAGCTTGTGGTGCCTGTTCTGGCTGTTCAAGATGGCCACCGGCAGAGACGGCATGGGCCATGGCGACTTCAAGT
TATTGGCCTTGCTGGGAGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGATGGCCTCGCTGCTGGGCGTGCTT
GCCGGGCTGATCCTGCTGCGTTTGCGTAAGGCCCAGGTGTCAGCGCCGATGCCGTTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.297	98.264	0.514
pilD	Vibrio campbellii strain DS40M4	49.474	98.958	0.49
pilD	Neisseria gonorrhoeae MS11	49.259	93.75	0.462
pilD	Acinetobacter baumannii D1279779	47.619	94.792	0.451
pilD	Acinetobacter nosocomialis M2	46.886	94.792	0.444