Detailed information NTG1036220

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB9V63_RS04740
• Genome accession: NZ_CP166920
• Coordinates: 959776..960648 (-)
• Length: 290 a.a.
• NCBI ID: WP_007246135.1
• Uniprot ID: A0AAW4E6R8
• Organism: Pseudomonas syringae pv. tomato strain GM 113
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 954776..965648

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB9V63_RS04710 (AB9V63_04710)	-	955486..956784 (-)	1299	WP_005614782.1	NAD(P)/FAD-dependent oxidoreductase	-
AB9V63_RS04715 (AB9V63_04715)	-	957001..957534 (-)	534	WP_005770014.1	MOSC domain-containing protein	-
AB9V63_RS04720 (AB9V63_04720)	-	957531..958160 (-)	630	WP_007246137.1	DUF1780 domain-containing protein	-
AB9V63_RS04725 (AB9V63_04725)	-	958357..958683 (+)	327	WP_007246136.1	hypothetical protein	-
AB9V63_RS04730 (AB9V63_04730)	yacG	958950..959159 (-)	210	WP_003381207.1	DNA gyrase inhibitor YacG	-
AB9V63_RS04735 (AB9V63_04735)	coaE	959156..959779 (-)	624	WP_005770017.1	dephospho-CoA kinase	-
AB9V63_RS04740 (AB9V63_04740)	pilD	959776..960648 (-)	873	WP_007246135.1	A24 family peptidase	Machinery gene
AB9V63_RS04745 (AB9V63_04745)	pilC	960650..961867 (-)	1218	WP_007246134.1	type II secretion system F family protein	Machinery gene
AB9V63_RS04750 (AB9V63_04750)	pilB	961870..963564 (-)	1695	WP_007246133.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB9V63_RS04755 (AB9V63_04755)	pilA2	963793..964224 (+)	432	WP_007246132.1	pilin	Machinery gene
AB9V63_RS04760 (AB9V63_04760)	-	964505..964861 (-)	357	WP_007246131.1	helix-turn-helix domain-containing protein	-
AB9V63_RS04765 (AB9V63_04765)	gstA	965020..965640 (+)	621	WP_007246130.1	glutathione transferase GstA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31995.21 Da
• Isoelectric Point: 8.1603

>NTDB_id=1036220 AB9V63_RS04740 WP_007246135.1 959776..960648(-) (pilD) [Pseudomonas syringae pv. tomato strain GM 113]
MPLLDLLASSPLAFVTTCCLLGLIVGSFLNVVVYRLPKMMERDWKVQSREMLGLPAEPDQPVFNLILPHSSCPHCAHKIR
PWENLPVISYLLLRGKCSHCKASISKRYPLVELTCAVLSAYVAWHFGFGWQAAAMLVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLSDALWGAVAGYLTLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=1036220 AB9V63_RS04740 WP_007246135.1 959776..960648(-) (pilD) [Pseudomonas syringae pv. tomato strain GM 113]
ATGCCCCTCCTCGACCTCTTGGCCAGCTCTCCCCTGGCCTTCGTCACCACCTGCTGCCTACTTGGCCTGATCGTCGGAAG
CTTCCTCAACGTGGTCGTCTACCGCCTCCCAAAAATGATGGAGCGCGACTGGAAAGTACAATCACGGGAAATGCTAGGCC
TCCCTGCCGAACCGGACCAACCCGTCTTCAACCTGATCCTGCCGCACTCAAGCTGCCCGCACTGCGCGCACAAGATCCGC
CCATGGGAAAACTTGCCGGTCATCAGCTACCTGTTGCTGCGGGGCAAATGCTCACACTGCAAAGCCTCCATCAGCAAGCG
CTACCCGTTGGTAGAACTGACCTGCGCAGTGTTGTCGGCCTACGTCGCCTGGCATTTCGGCTTCGGCTGGCAGGCGGCTG
CGATGCTGGTGTTGAGCTGGGGTTTGCTGGCGATGAGTCTGATCGATGCCGATCATCAGCTGTTACCTGACTCTTTGGTG
CTGCCACTGCTTTGGCTGGGCCTGATCGTTAACGCCTTTGGGCTGTTCACCTCGCTGAGCGACGCGCTGTGGGGTGCAGT
GGCCGGTTATCTGACGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACGGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGTTGCTGGCCATGCTTGGCGCGTGGGGTGGCTGGCAGATTCTGCCGTTGACCATTCTGCTGTCGTCACTGGTGGGT
GCGGTACTTGGGGTGATCATGATGCGCGTGCGCAGGGTCGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTATATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.417	97.586	0.531
pilD	Vibrio campbellii strain DS40M4	51.943	97.586	0.507
pilD	Acinetobacter baumannii D1279779	52.555	94.483	0.497
pilD	Acinetobacter nosocomialis M2	51.825	94.483	0.49
pilD	Neisseria gonorrhoeae MS11	52.239	92.414	0.483