Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AB9V63_RS03855 Genome accession   NZ_CP166920
Coordinates   783732..785072 (-) Length   446 a.a.
NCBI ID   WP_007246759.1    Uniprot ID   A0AB38EKK0
Organism   Pseudomonas syringae pv. tomato strain GM 113     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 778732..790072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9V63_RS03845 (AB9V63_03840) - 781612..782727 (-) 1116 WP_007246760.1 efflux RND transporter periplasmic adaptor subunit -
  AB9V63_RS03850 (AB9V63_03845) - 782809..783426 (-) 618 WP_005769275.1 TetR/AcrR family transcriptional regulator -
  AB9V63_RS03855 (AB9V63_03850) pilR 783732..785072 (-) 1341 WP_007246759.1 sigma-54 dependent transcriptional regulator Regulator
  AB9V63_RS03860 (AB9V63_03855) pilS 785075..786670 (-) 1596 WP_007246758.1 PAS domain-containing sensor histidine kinase Regulator
  AB9V63_RS03865 (AB9V63_03860) - 786660..786899 (-) 240 WP_057403016.1 PP0621 family protein -
  AB9V63_RS03870 (AB9V63_03865) - 787033..788055 (-) 1023 WP_005769279.1 outer membrane protein assembly factor BamD -
  AB9V63_RS03875 (AB9V63_03870) rluD 788205..789167 (+) 963 WP_003381266.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AB9V63_RS03880 (AB9V63_03875) pgeF 789164..789892 (+) 729 WP_007246755.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49943.93 Da        Isoelectric Point: 6.5611

>NTDB_id=1036218 AB9V63_RS03855 WP_007246759.1 783732..785072(-) (pilR) [Pseudomonas syringae pv. tomato strain GM 113]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPSATQPVHSIDSRLLGDSPPMRTLRNQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRIDKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLNIEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQLAAS
VLRRLAGNGAQPVARLHAHALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQAQQGANLADIDNLE
DYLESIERTLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1036218 AB9V63_RS03855 WP_007246759.1 783732..785072(-) (pilR) [Pseudomonas syringae pv. tomato strain GM 113]
ATGAGCCAACGGCAAAAGATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACCCTCGGGCGCAT
GAAGCTCGACACGCGCAGCGCCCGCAACGTTGCCGAGGCCCATGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGCCTGCCCGATGGCAACGGCCTGGAACTGGTGCAGCACATCCAGCACGGCTACCCTCATGTGCCGGTGGCG
ATGATCACCGCCCACGGCAACCTGGACACGGCGATTCATGCGTTAAAAGCCGGGGCCTTCGATTTCGTGACCAAACCGGT
GGACCTCAACCGGCTCCGCGAACTGGTCAATAGTGCTCTGAGCCTGCCCTCCGCCACTCAACCGGTGCACAGCATCGACA
GCCGTCTGCTGGGTGATTCGCCGCCGATGCGCACCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCACCCATC
TACATCAGCGGCGAATCGGGCAGTGGCAAAGAGCTGGTAGCCCGGCTGATTCACGAGCAAGGGCCGCGCATCGACAAACC
GTTCGTGCCGGTCAACTGCGGGGCTATCCCTTCCGAATTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCA
GCGGTGCCCACGAAGACAAGCCAGGGTTGTTTCAGGCGGCGCACAACGGCACGCTGTTTCTTGATGAGGTCGCTGATCTG
CCGCTGGCCATGCAGGTAAAACTGCTGCGCGCAATCCAGGAAAAGTCCATCCGCAGCGTCGGCGGTCAGCAGGAGCAGGT
CGTTGACGTGCGCATTCTATGCGCCACCCACAAGGACCTGAATATCGAAGTCGCTGCAGGTCGTTTCCGTCAGGACCTGT
ATTACCGACTGAACGTGATCGAACTGCGCGTACCTTCACTGCGCGAGCGGCGTGAGGATATCGATCAGTTGGCAGCCAGT
GTTTTGCGACGACTTGCCGGCAACGGCGCTCAGCCCGTCGCGCGCCTGCATGCGCATGCACTGGAAACGCTAAAAAGTTA
TCGATTCCCCGGGAACGTGCGCGAACTGGAAAACATGCTGGAACGCGCTTACACCCTCTGTGAAAACGATGAGATCCACG
CCAGCGACCTGCGTCTGGCAGAGTCCGCCAGCCCCCAGGCACAACAGGGTGCGAACCTGGCTGATATCGATAACCTGGAA
GACTACCTGGAAAGCATCGAACGCACACTCATCCTCCAGGCGCTGGAAGAAACCCGCTGGAACCGCACCGCAGCGGCCGA
GCGGCTCAGTTTGTCATTCAGATCGTTGCGTTACCGGTTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.104

99.327

0.776
  pilR Acinetobacter baumannii strain A118

48.491

100

0.504

Multiple sequence alignment