Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AB9V63_RS03860 Genome accession   NZ_CP166920
Coordinates   785075..786670 (-) Length   531 a.a.
NCBI ID   WP_007246758.1    Uniprot ID   A0AAW4E1T0
Organism   Pseudomonas syringae pv. tomato strain GM 113     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 780075..791670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9V63_RS03845 (AB9V63_03840) - 781612..782727 (-) 1116 WP_007246760.1 efflux RND transporter periplasmic adaptor subunit -
  AB9V63_RS03850 (AB9V63_03845) - 782809..783426 (-) 618 WP_005769275.1 TetR/AcrR family transcriptional regulator -
  AB9V63_RS03855 (AB9V63_03850) pilR 783732..785072 (-) 1341 WP_007246759.1 sigma-54 dependent transcriptional regulator Regulator
  AB9V63_RS03860 (AB9V63_03855) pilS 785075..786670 (-) 1596 WP_007246758.1 PAS domain-containing sensor histidine kinase Regulator
  AB9V63_RS03865 (AB9V63_03860) - 786660..786899 (-) 240 WP_057403016.1 PP0621 family protein -
  AB9V63_RS03870 (AB9V63_03865) - 787033..788055 (-) 1023 WP_005769279.1 outer membrane protein assembly factor BamD -
  AB9V63_RS03875 (AB9V63_03870) rluD 788205..789167 (+) 963 WP_003381266.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AB9V63_RS03880 (AB9V63_03875) pgeF 789164..789892 (+) 729 WP_007246755.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58337.17 Da        Isoelectric Point: 6.8230

>NTDB_id=1036219 AB9V63_RS03860 WP_007246758.1 785075..786670(-) (pilS) [Pseudomonas syringae pv. tomato strain GM 113]
MTAETPSLTSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQLF
GLAMTDAIMLSGLFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARLQVSEGLAEQRAADVDSLEELNALILQRMRTGIVVLDARRQVVLANQGALTLLGHERLVGQVID
AYSPQLVERLRQWLINPIMVPRSITTSSIGPVLQPSFAALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEDLSAPDRRLGQIIHDQSQRIDRVIENVLQLSRRREAQPELLDLKVWLENFVSDFRSSAAAD
QSIHVQISPGMLTTRMDAGQLTQIITNLVQNGLRYSRRNHPSAQVWLNLHHDRESDLPILEVLDDGPGVSEQNLSKIFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYIPRPHDGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=1036219 AB9V63_RS03860 WP_007246758.1 785075..786670(-) (pilS) [Pseudomonas syringae pv. tomato strain GM 113]
GTGACCGCTGAGACGCCTTCGCTTACCAGCCCGCAGGCGCAACGGATTCTGCGGCTGTATCACCTTTATCGACTGACCAT
TGGCGTCGTGCTGGTTCTGTTGATCTCCAGCAGCCTGGAAACCGAGTTGCTGCAACTGGCCAATCCGAATCTGTTCCGTT
CGGGCTGCTGGCTGTACCTGGTGTTCAACATTCTGGTGGTGGTGCTGCTGGAGCGCCCCAGCCGCCAGGCGCAGCTGTTT
GGCTTGGCGATGACCGACGCAATCATGCTTTCCGGGCTGTTTTATGCGGCCGGCGGGCCGTCGAGCGGCATCGGCAACCT
GTTGATCGCGTCTGTGGCGATCAGCAACGTGCTGCTGCGAGGCCGCATCGGCCTGTTGATCGCTGCTGTTTCTGCCATTG
GCATCATCTACCTGACGTTCTACATTAGCTTCGGCACACCTTCGGTGTCCAACGACTACGTGCAGGCCGGTTCTCTGGGT
GCGCTGTGCTTCGCCGCCGCGCTGTTGGTGCAGGCACTGACTGCGCGCCTGCAAGTCAGCGAGGGGCTGGCCGAGCAACG
GGCAGCGGATGTCGACAGCCTTGAAGAGCTCAACGCGCTGATCCTGCAGCGCATGCGCACCGGCATTGTGGTGCTGGATG
CGCGCCGCCAGGTGGTGCTGGCCAATCAGGGGGCCTTGACCCTGCTCGGCCACGAACGATTGGTCGGTCAGGTCATCGAC
GCTTACTCGCCGCAGTTGGTCGAGCGCCTGCGCCAGTGGCTGATCAACCCGATCATGGTGCCGCGCAGCATCACCACCTC
ATCTATCGGGCCTGTGCTGCAACCCAGCTTTGCCGCGCTCAATCGGGGCGACCAGCGTCAAACGCTGATCTTCCTTGAAG
ATCTGTCGCAGATTGCCCATCAGGCGCAGCAGCTCAAACTTGCTGCGCTGGGCCGCCTGACCGCAGGCATCGCCCACGAA
ATACGCAACCCGTTGGGTGCGGTCAGCCATGCTGCGCAGTTACTCAACGAGTCGGAAGACCTCAGCGCGCCGGATCGCCG
TCTGGGGCAGATCATTCATGATCAGTCGCAGCGCATTGATCGGGTGATTGAAAACGTCCTGCAATTGTCTCGCCGACGCG
AAGCACAACCCGAACTGCTCGACCTGAAAGTCTGGCTGGAAAATTTTGTCAGCGACTTTCGTAGCTCGGCCGCTGCGGAT
CAGTCGATTCATGTGCAAATAAGCCCAGGCATGCTGACCACTCGCATGGACGCCGGGCAACTGACCCAGATCATCACCAA
CCTGGTGCAGAACGGCCTACGCTACAGCCGCCGCAATCACCCGTCGGCGCAGGTCTGGCTGAACCTGCACCATGACCGGG
AAAGCGATTTACCCATCCTGGAGGTGCTGGACGACGGGCCGGGTGTCAGCGAACAAAACCTGAGCAAGATTTTCGAACCG
TTTTTCACCACGGAAAGCAAAGGCACCGGCCTGGGTCTATACCTTTCCCGTGAATTGTGCGAAAGCAATCAGGCGCATCT
GGAATATATCCCCCGACCACACGACGGTGGCAGCTGTTTGCGCATCACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.842

100

0.62

Multiple sequence alignment