Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACAW63_RS09490 Genome accession   NZ_CP166873
Coordinates   2062036..2063376 (-) Length   446 a.a.
NCBI ID   WP_371233258.1    Uniprot ID   -
Organism   Pseudomonas sp. QE6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2057036..2068376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAW63_RS09460 (ACAW63_09455) - 2057758..2058228 (-) 471 WP_371233249.1 PilX N-terminal domain-containing pilus assembly protein -
  ACAW63_RS09465 (ACAW63_09460) - 2058225..2059121 (-) 897 WP_371233251.1 PilW family protein -
  ACAW63_RS09470 (ACAW63_09465) pilV 2059118..2059576 (-) 459 WP_371233253.1 type IV pilus modification protein PilV -
  ACAW63_RS09475 (ACAW63_09470) - 2059573..2060061 (-) 489 WP_371233255.1 GspH/FimT family pseudopilin -
  ACAW63_RS09480 (ACAW63_09475) - 2060212..2060724 (-) 513 WP_371233256.1 GspH/FimT family pseudopilin -
  ACAW63_RS09485 (ACAW63_09480) thiO 2060914..2062023 (+) 1110 WP_371233257.1 glycine oxidase ThiO -
  ACAW63_RS09490 (ACAW63_09485) pilR 2062036..2063376 (-) 1341 WP_371233258.1 sigma-54-dependent transcriptional regulator Regulator
  ACAW63_RS09495 (ACAW63_09490) pilS 2063392..2064981 (-) 1590 WP_371233259.1 ATP-binding protein Regulator
  ACAW63_RS09500 (ACAW63_09495) - 2064971..2065207 (-) 237 WP_207888483.1 PP0621 family protein -
  ACAW63_RS09505 (ACAW63_09500) - 2065345..2066370 (-) 1026 WP_371233260.1 outer membrane protein assembly factor BamD -
  ACAW63_RS09510 (ACAW63_09505) rluD 2066520..2067479 (+) 960 WP_371233261.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACAW63_RS09515 (ACAW63_09510) pgeF 2067476..2068201 (+) 726 WP_371233262.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49834.04 Da        Isoelectric Point: 5.6448

>NTDB_id=1035873 ACAW63_RS09490 WP_371233258.1 2062036..2063376(-) (pilR) [Pseudomonas sp. QE6]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREFLAREPFDFCLTDMRLPDGTGLDLVQYIQQRHPQTPVAM
ITAFGSLDTAVQALKAGAFDFLTKPVDLGRLRELVSTALRLRFPDADEAPVDNRLLGDSPPMRQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRANIAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEQAVDVRVLCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTERV
LQRLASDAGLPVASVSPDAVEKLKSYRFPGNVRELENMLERAYTLCENDVIQPQDLRLAETSSGGDNSGQASLAQIDNLE
DYLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1035873 ACAW63_RS09490 WP_371233258.1 2062036..2063376(-) (pilR) [Pseudomonas sp. QE6]
ATGAGTCGTCAAAAAGCCCTGATCGTCGATGACGAACCCGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCATGAA
GCTGGATACCCGCAGCGCCCGTAACGTCAAGGAAGCGCGCGAATTCCTGGCCCGCGAGCCGTTCGACTTCTGCCTCACCG
ACATGCGCCTGCCCGACGGTACCGGGCTGGATCTGGTGCAGTACATCCAGCAGCGCCATCCGCAAACCCCGGTGGCGATG
ATCACCGCCTTCGGCAGCCTGGATACCGCCGTGCAGGCACTCAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGTCGA
CCTGGGACGCCTGCGCGAGCTGGTCAGCACGGCGCTGCGCCTGCGCTTCCCCGATGCCGACGAGGCCCCGGTGGACAATC
GCCTGCTGGGCGACTCGCCCCCCATGCGGCAGATGCGCAACCAGATCGCCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAACTGGTCGCCCGCCTGATCCATGAACAGGGCCCGCGCGCGAATATCGCCTT
CGTCCCGGTGAACTGCGGCGCGATTCCGTCGGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAGGGCAGCTTCACTG
GCGCCGTGGAGGACAAGCAGGGACTGTTCCAGGCTGCCAACGGCGGCACCCTGTTCCTCGACGAGGTCGCCGACCTGCCG
CTGCCCATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCGCCGTCGGCGGCCAACAGGAGCAGGCCGT
GGACGTACGCGTCCTCTGCGCCACCCACAAGGACCTCGCGGCGGAAGTTGCCGCCGGCCGCTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGAGGACATTCCACTACTCACCGAGCGCGTG
CTCCAGCGCCTGGCTAGCGATGCAGGACTGCCTGTTGCGAGCGTCAGCCCGGACGCCGTGGAGAAGCTCAAGAGCTACCG
CTTCCCCGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGCGCCTACACCCTATGCGAGAACGATGTGATCCAGCCGC
AGGACCTGCGCCTGGCCGAGACCAGCAGCGGCGGCGACAACAGCGGGCAGGCCAGTCTTGCGCAGATCGACAACCTCGAG
GACTACCTGGAGGAAATCGAGCGCAAGCTGATCATGCAGGCCCTCGAAGAGACGCGCTGGAACCGCACCGCGGCGGCGCA
GCGGCTCGGACTCACCTTCCGCTCGATGCGTTATCGGTTGAAGAAGCTGGGGATCGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.565

100

0.886
  pilR Acinetobacter baumannii strain A118

49.673

100

0.511

Multiple sequence alignment