Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACAW63_RS09495 Genome accession   NZ_CP166873
Coordinates   2063392..2064981 (-) Length   529 a.a.
NCBI ID   WP_371233259.1    Uniprot ID   -
Organism   Pseudomonas sp. QE6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2058392..2069981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAW63_RS09470 (ACAW63_09465) pilV 2059118..2059576 (-) 459 WP_371233253.1 type IV pilus modification protein PilV -
  ACAW63_RS09475 (ACAW63_09470) - 2059573..2060061 (-) 489 WP_371233255.1 GspH/FimT family pseudopilin -
  ACAW63_RS09480 (ACAW63_09475) - 2060212..2060724 (-) 513 WP_371233256.1 GspH/FimT family pseudopilin -
  ACAW63_RS09485 (ACAW63_09480) thiO 2060914..2062023 (+) 1110 WP_371233257.1 glycine oxidase ThiO -
  ACAW63_RS09490 (ACAW63_09485) pilR 2062036..2063376 (-) 1341 WP_371233258.1 sigma-54-dependent transcriptional regulator Regulator
  ACAW63_RS09495 (ACAW63_09490) pilS 2063392..2064981 (-) 1590 WP_371233259.1 ATP-binding protein Regulator
  ACAW63_RS09500 (ACAW63_09495) - 2064971..2065207 (-) 237 WP_207888483.1 PP0621 family protein -
  ACAW63_RS09505 (ACAW63_09500) - 2065345..2066370 (-) 1026 WP_371233260.1 outer membrane protein assembly factor BamD -
  ACAW63_RS09510 (ACAW63_09505) rluD 2066520..2067479 (+) 960 WP_371233261.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACAW63_RS09515 (ACAW63_09510) pgeF 2067476..2068201 (+) 726 WP_371233262.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58753.01 Da        Isoelectric Point: 7.3616

>NTDB_id=1035874 ACAW63_RS09495 WP_371233259.1 2063392..2064981(-) (pilS) [Pseudomonas sp. QE6]
MATEGISLTGQGRRVLRLYHLYRLTIGLVLVLLISSNLDGEILKLAHTELFHIGCWTYLVVNILIAVLMPAPRQLMPLFI
LAALDVLMLSGLFYAAGGVPSGIGTLMVIAVAIANILLRGRIGLLIAALASIGLIYLTFYISLTQEIAFNHYVQAGGLGA
LCFASALLIQALARRQQVIENLAEQRAATVANLEELNALILQRMRTGILVLDDQQRVLLANQSATTLLGGQELAGQPLAE
HSAALLNSLRLWQRNPALRPPSLQPHETAPSVQPAFIPLHRGHEQHTLMFLEDISQIAQQAQQLKLASLGRLTAGIAHEI
RNPLGAISHAAQLLLESEELDPPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQAEPQSLDLKYWLQRFVDEQREGLREDQ
QLHVETGPGAVQTRMDPHQLTQVLTNLVQNGLRYSAKKNGTGQVWLRLFRDSETDLPILEVLDDGQGIAAEQRVRLFEPF
FTTESKGTGLGLYISRELCESNQARLDYKTRDEGGSCFRITFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1035874 ACAW63_RS09495 WP_371233259.1 2063392..2064981(-) (pilS) [Pseudomonas sp. QE6]
GTGGCCACTGAAGGCATTTCGCTCACCGGGCAGGGACGGCGCGTCCTGCGCCTGTATCACCTGTACCGCCTGACCATAGG
GCTGGTCCTGGTACTGCTGATTTCCAGCAACCTGGACGGCGAGATCCTCAAGCTCGCCCACACCGAACTGTTCCACATCG
GCTGCTGGACCTACCTGGTGGTCAACATCCTGATCGCCGTCCTCATGCCGGCCCCCCGGCAACTGATGCCGCTGTTCATC
CTGGCGGCGCTGGACGTGCTGATGCTCAGCGGCCTGTTCTACGCCGCCGGCGGCGTCCCCAGCGGTATCGGCACGCTGAT
GGTGATCGCCGTCGCCATCGCCAACATCCTGCTGCGCGGCCGGATAGGCCTTCTGATTGCCGCATTGGCGTCCATCGGGC
TGATCTACCTGACCTTCTACATCAGCCTTACCCAGGAGATCGCCTTCAACCACTATGTACAGGCCGGCGGGCTGGGCGCC
CTGTGCTTCGCCTCGGCGCTGCTGATCCAGGCGCTGGCGCGCCGCCAACAGGTCATCGAGAACCTCGCGGAACAACGGGC
CGCCACGGTAGCCAATCTCGAAGAACTCAACGCCCTGATCCTCCAGCGCATGCGTACCGGCATCCTGGTGCTGGACGATC
AGCAGCGCGTGCTGCTGGCCAACCAGAGCGCCACCACCCTGCTCGGCGGACAGGAACTGGCCGGACAGCCACTGGCCGAG
CACAGCGCAGCGCTGCTCAACAGCCTGCGGCTGTGGCAGCGGAACCCCGCCCTGCGGCCGCCCAGCCTGCAGCCACACGA
GACCGCGCCCAGCGTGCAGCCCGCCTTCATCCCCCTGCACCGTGGCCATGAACAGCACACCCTGATGTTCCTCGAGGACA
TCTCGCAGATCGCCCAGCAGGCGCAGCAGCTCAAGCTGGCCTCGCTCGGCCGCCTCACCGCCGGCATCGCCCATGAGATC
CGCAACCCCCTGGGCGCCATCAGCCACGCCGCGCAATTGCTGCTGGAGTCAGAAGAACTCGATCCACCGGACCGACGGCT
GACGCAGATCATCCAGGACCAGTCGCGGCGCATGAACCTGGTGATCGAGAACGTGCTGCAGCTGTCGCGCCGACGCCAGG
CGGAACCCCAATCGCTCGACCTGAAATACTGGCTGCAGCGTTTCGTCGACGAACAGCGTGAGGGGCTGCGCGAAGACCAG
CAGCTGCATGTCGAAACCGGGCCCGGCGCTGTGCAGACGCGCATGGACCCGCATCAGCTGACGCAGGTGCTGACCAACCT
GGTCCAGAATGGGTTACGGTACAGCGCCAAGAAAAACGGCACCGGCCAGGTGTGGCTGCGCCTGTTCCGCGACAGCGAAA
CCGACCTGCCGATCCTGGAAGTCCTCGACGATGGCCAGGGCATTGCGGCGGAGCAGCGGGTGAGGCTGTTCGAGCCGTTC
TTCACCACCGAAAGCAAGGGCACAGGTCTTGGGCTGTACATCTCCCGGGAGCTCTGTGAAAGCAACCAGGCGCGCCTGGA
CTATAAGACGCGTGACGAGGGGGGCAGCTGCTTCCGCATCACCTTCGCCCATCCACGCAAACAAAGCTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

72.64

98.11

0.713

Multiple sequence alignment