Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   ABKQ09_RS18700 Genome accession   NZ_CP166870
Coordinates   3718481..3718600 (+) Length   39 a.a.
NCBI ID   WP_010332289.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3713481..3723600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS18680 (ABKQ09_18675) - 3713528..3714904 (-) 1377 WP_371176169.1 YncE family protein -
  ABKQ09_RS18685 (ABKQ09_18680) - 3714944..3716305 (-) 1362 WP_371176170.1 YncE family protein -
  ABKQ09_RS18690 (ABKQ09_18685) - 3716588..3717142 (+) 555 WP_003326492.1 YdhK family protein -
  ABKQ09_RS18695 (ABKQ09_18690) rapF 3717355..3718497 (+) 1143 WP_268489748.1 tetratricopeptide repeat protein Regulator
  ABKQ09_RS18700 (ABKQ09_18695) phrF 3718481..3718600 (+) 120 WP_010332289.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  ABKQ09_RS18705 (ABKQ09_18700) - 3718855..3719334 (+) 480 WP_010790246.1 hypothetical protein -
  ABKQ09_RS18710 (ABKQ09_18705) - 3719484..3720272 (+) 789 WP_371176171.1 hypothetical protein -
  ABKQ09_RS18715 (ABKQ09_18710) - 3720259..3720933 (+) 675 WP_035175329.1 hypothetical protein -
  ABKQ09_RS18720 (ABKQ09_18715) - 3720943..3721740 (+) 798 WP_258176553.1 hypothetical protein -
  ABKQ09_RS18725 (ABKQ09_18720) - 3721743..3722390 (+) 648 WP_010790250.1 ABC transporter ATP-binding protein -
  ABKQ09_RS18730 (ABKQ09_18725) - 3722383..3722940 (+) 558 WP_010790251.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4160.08 Da        Isoelectric Point: 10.4997

>NTDB_id=1035791 ABKQ09_RS18700 WP_010332289.1 3718481..3718600(+) (phrF) [Bacillus atrophaeus strain F4]
MKLKSKILLSCLALSTVFVATSIATAPAHQMEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1035791 ABKQ09_RS18700 WP_010332289.1 3718481..3718600(+) (phrF) [Bacillus atrophaeus strain F4]
ATGAAATTGAAGTCTAAAATATTACTCTCTTGTCTGGCCCTAAGCACAGTGTTTGTCGCAACGAGTATTGCAACTGCACC
TGCACATCAAATGGAAGTTGCTCAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

85.185

69.231

0.59
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment