Detailed information NTG1035790

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ABKQ09_RS18695
• Genome accession: NZ_CP166870
• Coordinates: 3717355..3718497 (+)
• Length: 380 a.a.
• NCBI ID: WP_268489748.1
• Uniprot ID: -
• Organism: Bacillus atrophaeus strain F4
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3712355..3723497

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABKQ09_RS18675 (ABKQ09_18670)	-	3713116..3713373 (-)	258	Protein_3627	YncE family protein	-
ABKQ09_RS18680 (ABKQ09_18675)	-	3713528..3714904 (-)	1377	WP_371176169.1	YncE family protein	-
ABKQ09_RS18685 (ABKQ09_18680)	-	3714944..3716305 (-)	1362	WP_371176170.1	YncE family protein	-
ABKQ09_RS18690 (ABKQ09_18685)	-	3716588..3717142 (+)	555	WP_003326492.1	YdhK family protein	-
ABKQ09_RS18695 (ABKQ09_18690)	rapF	3717355..3718497 (+)	1143	WP_268489748.1	tetratricopeptide repeat protein	Regulator
ABKQ09_RS18700 (ABKQ09_18695)	phrF	3718481..3718600 (+)	120	WP_010332289.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
ABKQ09_RS18705 (ABKQ09_18700)	-	3718855..3719334 (+)	480	WP_010790246.1	hypothetical protein	-
ABKQ09_RS18710 (ABKQ09_18705)	-	3719484..3720272 (+)	789	WP_371176171.1	hypothetical protein	-
ABKQ09_RS18715 (ABKQ09_18710)	-	3720259..3720933 (+)	675	WP_035175329.1	hypothetical protein	-
ABKQ09_RS18720 (ABKQ09_18715)	-	3720943..3721740 (+)	798	WP_258176553.1	hypothetical protein	-
ABKQ09_RS18725 (ABKQ09_18720)	-	3721743..3722390 (+)	648	WP_010790250.1	ABC transporter ATP-binding protein	-
ABKQ09_RS18730 (ABKQ09_18725)	-	3722383..3722940 (+)	558	WP_010790251.1	hypothetical protein	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 45596.22 Da
• Isoelectric Point: 5.5458

>NTDB_id=1035790 ABKQ09_RS18695 WP_268489748.1 3717355..3718497(+) (rapF) [Bacillus atrophaeus strain F4]
MTGVISSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELTQIEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRL
SDLLLEIDKKQARLTGVLDYYFNLFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSM
DYARQAYEIYKEHTAYNIRLLQCHSLFATNFLDFKQYEDAISHFKKAYTMAESEKQPQLMGRTLYNIGLCKNSQDQYESA
ITYFKRAISVFEEANILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGIAYSKEAGDIIYLSEFEFLKSLYLSGPDEEAIQ
KFFDFLESKMMYADLEDFALDVAKYYYGRENFQKASAYFLKVERVRQLIQGGVKLYEIEV

Nucleotide

• Length: 1143 bp

>NTDB_id=1035790 ABKQ09_RS18695 WP_268489748.1 3717355..3718497(+) (rapF) [Bacillus atrophaeus strain F4]
GTGACAGGCGTCATATCTTCTTCCATTGGAGAAAAGATTAATGAATGGTACATGTACATACGCCGATTCAGCATACCGGA
TGCGGAATACTTACGAAGAGAAATCAAACAAGAGCTGACTCAAATAGAAGAAGACCAGGATCTTCATTTGTATTATTCAC
TGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTAGAACCGTTAGAAAAAATGCGGATAGAAGAACAGCCACGACTG
TCCGATTTACTGCTTGAAATCGATAAAAAACAGGCTCGTTTAACCGGAGTCCTTGATTATTACTTTAATCTCTTCAGGGG
GATGTACGAACTGGACCAGCGGGAGTACTTGTCTGCTATTAAATTTTTCAAAAAAGCCGAAAGCAAGCTGATTTTTGTAA
AGGATCGAATAGAAAAAGCTGAGTTTTTCTTTAAAATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCCATG
GACTATGCACGGCAGGCATATGAAATATACAAAGAGCACACGGCATATAATATTAGATTGCTTCAATGCCATTCTTTGTT
TGCTACCAATTTCTTAGATTTCAAGCAATATGAGGACGCCATATCACATTTCAAAAAAGCTTATACAATGGCAGAATCCG
AAAAACAGCCCCAATTAATGGGAAGAACGCTGTATAACATTGGGCTTTGCAAAAACAGCCAAGACCAGTATGAGTCAGCA
ATCACATATTTCAAAAGAGCCATATCTGTTTTTGAAGAAGCTAATATTCTTCCTTCTCTGCCTCAAGCTTATTTTTTGAT
TACACAAATTCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAAGGAATTGCTTATTCTAAAGAGG
CCGGAGATATCATTTACTTATCGGAGTTTGAATTTTTGAAATCTTTATACTTATCTGGCCCGGATGAAGAGGCAATTCAG
AAATTCTTCGATTTTCTCGAAAGTAAAATGATGTATGCTGATCTTGAAGATTTTGCGCTTGATGTGGCAAAATATTATTA
TGGACGTGAAAATTTCCAAAAAGCTTCCGCGTATTTTCTGAAGGTGGAACGAGTAAGGCAGCTTATTCAAGGAGGAGTGA
AGTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (222-289)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-64)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	92.388	100	0.926
rapC	Bacillus subtilis subsp. subtilis str. 168	57.632	100	0.576