Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ABKQ09_RS17635 Genome accession   NZ_CP166870
Coordinates   3509031..3509720 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus atrophaeus strain F4     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3504031..3514720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS17600 (ABKQ09_17595) - 3504210..3504692 (-) 483 WP_061669176.1 flagellar protein FlgN -
  ABKQ09_RS17605 (ABKQ09_17600) flgM 3504708..3504968 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABKQ09_RS17610 (ABKQ09_17605) - 3505048..3505467 (-) 420 WP_003326721.1 TIGR03826 family flagellar region protein -
  ABKQ09_RS17615 (ABKQ09_17610) comFC 3505539..3506261 (-) 723 WP_155723718.1 double zinc ribbon domain-containing protein Machinery gene
  ABKQ09_RS17620 (ABKQ09_17615) - 3506225..3506521 (-) 297 WP_003326719.1 late competence development ComFB family protein -
  ABKQ09_RS17625 (ABKQ09_17620) comFA 3506578..3507975 (-) 1398 WP_061669174.1 ATP-dependent helicase ComFA Machinery gene
  ABKQ09_RS17630 (ABKQ09_17625) - 3508082..3508924 (-) 843 WP_268513897.1 DegV family protein -
  ABKQ09_RS17635 (ABKQ09_17630) degU 3509031..3509720 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABKQ09_RS17640 (ABKQ09_17635) degS 3509797..3510960 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  ABKQ09_RS17645 (ABKQ09_17640) - 3511178..3511831 (+) 654 WP_003326713.1 YigZ family protein -
  ABKQ09_RS17650 (ABKQ09_17645) - 3511831..3513087 (+) 1257 WP_106360079.1 LCP family protein -
  ABKQ09_RS17655 (ABKQ09_17650) - 3513178..3514254 (-) 1077 WP_003326711.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1035785 ABKQ09_RS17635 WP_003219701.1 3509031..3509720(-) (degU) [Bacillus atrophaeus strain F4]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1035785 ABKQ09_RS17635 WP_003219701.1 3509031..3509720(-) (degU) [Bacillus atrophaeus strain F4]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAATTATTTCGTGAAGGTGTTAAGCGAATATTAGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCAGCTCGTATTGTTGAGCACTATCATCCTGACGTAGTCA
TTATGGATATTAATATGCCGAATGTAAATGGTGTGGAAGCTACTAAGCAGCTTGTAGAGCTGTATCCAGAATCAAAAGTA
ATTATCTTGTCTATTCATGATGATGAAAATTATGTGACACATGCCTTAAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
AATGGACGCTGATACTTTAATCGAAGCAGTTAAAGTGGTGGCGGAAGGCGGTTCATATCTCCATCCGAAGGTCACTCACA
ATCTTGTAAACGAGTTTCGACGTCTTGCAACAAGCGGAGTTTCTGCCCATCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATTCTAACCAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGTAAAAGCAACCGCGGTATAGG
CGAATCACTATTTATCAGTGAAAAAACAGTCAAAAATCATGTCAGCAATATTTTGCAAAAAATGAACGTAAACGATCGGA
CGCAAGCAGTTGTGGTCGCGATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment