Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ABKQ09_RS17625 Genome accession   NZ_CP166870
Coordinates   3506578..3507975 (-) Length   465 a.a.
NCBI ID   WP_061669174.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3501578..3512975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS17590 (ABKQ09_17585) flgL 3501762..3502658 (-) 897 WP_061669178.1 flagellar hook-associated protein FlgL -
  ABKQ09_RS17595 (ABKQ09_17590) flgK 3502670..3504193 (-) 1524 WP_061669177.1 flagellar hook-associated protein FlgK -
  ABKQ09_RS17600 (ABKQ09_17595) - 3504210..3504692 (-) 483 WP_061669176.1 flagellar protein FlgN -
  ABKQ09_RS17605 (ABKQ09_17600) flgM 3504708..3504968 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABKQ09_RS17610 (ABKQ09_17605) - 3505048..3505467 (-) 420 WP_003326721.1 TIGR03826 family flagellar region protein -
  ABKQ09_RS17615 (ABKQ09_17610) comFC 3505539..3506261 (-) 723 WP_155723718.1 double zinc ribbon domain-containing protein Machinery gene
  ABKQ09_RS17620 (ABKQ09_17615) - 3506225..3506521 (-) 297 WP_003326719.1 late competence development ComFB family protein -
  ABKQ09_RS17625 (ABKQ09_17620) comFA 3506578..3507975 (-) 1398 WP_061669174.1 ATP-dependent helicase ComFA Machinery gene
  ABKQ09_RS17630 (ABKQ09_17625) - 3508082..3508924 (-) 843 WP_268513897.1 DegV family protein -
  ABKQ09_RS17635 (ABKQ09_17630) degU 3509031..3509720 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABKQ09_RS17640 (ABKQ09_17635) degS 3509797..3510960 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  ABKQ09_RS17645 (ABKQ09_17640) - 3511178..3511831 (+) 654 WP_003326713.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53074.63 Da        Isoelectric Point: 10.0250

>NTDB_id=1035784 ABKQ09_RS17625 WP_061669174.1 3506578..3507975(-) (comFA) [Bacillus atrophaeus strain F4]
MQTELEKKPLFSADLQQFLHHRHLLRTEIPFSEELINWHIEHGFISAEKSIIKNKKGYLCNRCGQNDKRYFSSYWSCSDE
KNQMYCRSCVMMGRVSENIFLYSWIKEVEASWQPIKLTWEGKLSLGQQKAADILIDAITKREELLIWAVCGAGKTEILFP
GIEFALNQGFRVCIATPRTDVVLELTPRLKTAFQTTKVSALYGGSEDKGSLSPLMISTTHQLLRYKEAFDVIIIDEVDAF
PYSADQTLQFAVQKARKKNSTLIYLSATPSKELKKKAHIGKLNSVRIPARHHRKPLPEPRFCWCGNWQKKLAGSKIPKQV
KIWVEQHVKVGRPVFLFVPSVSVLEKVTACFAGMRYRTAGVHAEDKNRKEKVQQFRDGRLDVLITTTILERGVTIPMVQT
GVLGAESPIFTESALVQIAGRTGRHKKHAQGDVIYFHFGKTKSMIDARNHINEMNKLARKNELID

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=1035784 ABKQ09_RS17625 WP_061669174.1 3506578..3507975(-) (comFA) [Bacillus atrophaeus strain F4]
ATGCAGACTGAGTTGGAAAAGAAACCTTTATTCTCTGCTGATCTGCAGCAGTTCCTTCATCACCGCCACTTGCTTAGAAC
TGAAATCCCATTCTCTGAGGAACTTATCAACTGGCATATTGAGCATGGTTTTATTTCCGCTGAAAAATCAATCATCAAAA
ATAAAAAGGGTTATTTGTGTAACAGGTGCGGCCAAAATGATAAGCGGTATTTTTCCTCCTACTGGTCATGCTCAGATGAA
AAAAATCAAATGTATTGCCGTTCGTGTGTCATGATGGGAAGAGTAAGCGAGAACATTTTCTTATATTCATGGATAAAGGA
GGTGGAAGCAAGCTGGCAGCCTATAAAGCTTACTTGGGAAGGTAAACTCTCTCTTGGACAGCAAAAAGCGGCGGATATTT
TAATTGACGCGATAACTAAAAGGGAAGAGCTTCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACCGAAATATTATTCCCG
GGCATTGAGTTTGCGTTAAATCAGGGATTTCGCGTATGTATTGCAACACCGCGCACCGATGTCGTACTAGAGCTTACTCC
AAGGCTGAAAACCGCCTTTCAGACCACAAAGGTCTCAGCCCTTTACGGAGGGAGTGAAGATAAAGGGAGCCTGTCCCCGC
TGATGATTTCAACGACACATCAGCTATTACGTTACAAAGAAGCATTTGACGTCATCATCATAGACGAAGTTGATGCTTTT
CCTTATTCTGCTGATCAAACTCTCCAGTTTGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCATTTATTTAAGTGC
AACACCTTCCAAAGAATTAAAAAAGAAAGCGCATATAGGGAAGTTAAACTCGGTTCGCATACCCGCAAGACATCACCGGA
AACCATTGCCTGAACCACGTTTTTGCTGGTGCGGAAACTGGCAAAAAAAATTAGCCGGAAGCAAAATTCCGAAACAGGTG
AAAATATGGGTAGAACAGCATGTGAAAGTAGGTAGACCTGTTTTTTTATTTGTGCCGTCTGTTTCCGTTTTAGAGAAAGT
TACTGCCTGTTTCGCCGGCATGAGATATCGGACAGCGGGTGTGCATGCGGAAGATAAGAACCGTAAAGAGAAAGTGCAGC
AATTCAGGGACGGCCGGCTTGATGTATTAATCACAACGACCATATTAGAAAGAGGAGTTACTATTCCAATGGTGCAGACT
GGCGTATTGGGAGCTGAATCGCCTATATTTACTGAGAGCGCACTCGTCCAAATCGCCGGGAGGACAGGGCGGCATAAAAA
ACATGCTCAGGGTGACGTCATATATTTTCACTTTGGAAAAACAAAGAGTATGATAGATGCCAGAAATCATATAAACGAAA
TGAATAAATTGGCAAGAAAAAACGAATTAATAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(123-270)

Helicase conserved C-terminal domain (Helicase_C)

(326-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

76.129

100

0.761

Multiple sequence alignment