Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LSO74_RS06450 Genome accession   NZ_OV040719
Coordinates   1264553..1265893 (+) Length   446 a.a.
NCBI ID   WP_005656929.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 3655 isolate 3655     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1259553..1270893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO74_RS06435 (KRLU3655_LOCUS1210) lrp 1260617..1261096 (+) 480 WP_005653255.1 leucine-responsive transcriptional regulator Lrp -
  LSO74_RS06440 (KRLU3655_LOCUS1211) - 1261098..1263857 (+) 2760 WP_005656933.1 DNA translocase FtsK -
  LSO74_RS06445 (KRLU3655_LOCUS1212) lolA 1263875..1264492 (+) 618 WP_005656931.1 outer membrane lipoprotein chaperone LolA -
  LSO74_RS06450 (KRLU3655_LOCUS1213) rarA 1264553..1265893 (+) 1341 WP_005656929.1 replication-associated recombination protein A Machinery gene
  LSO74_RS06455 (KRLU3655_LOCUS1214) aroA 1265974..1267272 (-) 1299 WP_005656927.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  LSO74_RS06460 (KRLU3655_LOCUS1215) purU 1267272..1268108 (-) 837 WP_005656925.1 formyltetrahydrofolate deformylase -
  LSO74_RS06465 (KRLU3655_LOCUS1216) - 1268178..1268582 (-) 405 WP_005656923.1 H-NS family nucleoid-associated regulatory protein -
  LSO74_RS06470 (KRLU3655_LOCUS1217) - 1269025..1270545 (+) 1521 WP_005661480.1 Na+/H+ antiporter NhaC family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50235.07 Da        Isoelectric Point: 6.3316

>NTDB_id=1035784 LSO74_RS06450 WP_005656929.1 1264553..1265893(+) (rarA) [Haemophilus influenzae strain 3655 isolate 3655]
MSNLNFDFAENDFRPLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVY
VLKSLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAEETENGKKIDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSAVKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1035784 LSO74_RS06450 WP_005656929.1 1264553..1265893(+) (rarA) [Haemophilus influenzae strain 3655 isolate 3655]
ATGTCTAACCTCAATTTTGATTTTGCCGAAAATGATTTTCGCCCACTGGCAGCCAAGATGCGTCCAACGAGTCTAGAACA
ATATTTTGGGCAAAGCCATTTAATTGGCGAGGGCAAGCCATTGCGAAAAGCTATCCAAGCTGGGCATATTCATTCTATGA
TTTTGTGGGGACCACCAGGTACGGGGAAAACAACCCTTGCAGAAATCATAGCACAACGTATTAATGCGGAAGTAGAGCGA
ATTTCTGCGGTGACGAGTGGCATCAAAGAAATTCGTGAAGCGATTGATCGTGCAAAACAAAATCGTCTTGCGGATCGTAA
AACTATCTTATTTGTGGATGAAGTCCATCGTTTTAATAAAAGCCAGCAAGATGCATTTTTACCGCATATTGAAGATGGAA
CTGTTATTTTTATTGGGGCGACAACAGAAAATCCCTCTTTTGAGCTAAATAATGCGTTGCTTTCTCGTGCCCGAGTGTAT
GTGCTGAAATCACTCACAACGGCTGAAATTGAACAAGTTTTGCAGCAAGCTGTAGAAGATCCTGAACGTGGATTGGGTAA
AGAGCGGTTAATTTTAGAAGAGAATTTACTGCAAGTACTTGCCGAATATGTTAATGGGGATGCACGATTAGCCTTGAATT
GCCTCGAATTAATGGTGGATATGGCAGAAGAAACGGAAAATGGAAAGAAAATTGACCGCACTTTATTAAAAGAAGTCTTA
GGAGAACGCCAAGCGAGATTTGATAAACAAGGTGATCGTTTCTATGATTTAATTTCTGCGCTACATAAATCTGTTCGAGG
TTCTGCTCCAGATGCTGCGCTGTATTGGTATGCAAGAATTTTAACAGCGGGTGGAGACCCTTTATATGTTGCGCGCCGAT
TACTTGCCATTGCTTCAGAAGATGTGGGAAATGCAGATCCTCGAGCTATGCAAGTCGCATTGGCTGCTTGGGATTGCTTT
ACTCGAGTGGGGGCTTATGAAGGGGAGCGAGCCATCGCCCAAGCCATTATTTATCTTGCAGTAGCCCCAAAAAGTAATGC
GGTTTATACCGCATTTAACACTGCGAAACAGCAAGCGAAAGATTTACCTGATTACGATGTTCCACCACATTTACGCAATG
CGCCGACTAATTTAATGAAAGAGCTCGGATATGGCACTGAATATCGTTATGCTCACGATGAACCTAACGCTTATGCGGCA
GGCGAAAATTATTTCCCACCTGAATTAAAAGACACTCAATATTATTTTCCGACAAATAGAGGTATGGAAATTCAGATTAA
GGAAAAACTAGAACGGTTACGTGAGCAAGATAAAAGTGCGGTGAAAAAACGGTATAAATAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(53-159)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

AAA C-terminal domain (AAA_assoc_2)

(188-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.243

94.843

0.372

Multiple sequence alignment