Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ABKQ09_RS15725 Genome accession   NZ_CP166870
Coordinates   3131724..3132365 (-) Length   213 a.a.
NCBI ID   WP_003327154.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3126724..3137365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS15690 (ABKQ09_15685) - 3127917..3128348 (+) 432 WP_003327161.1 Na(+)/H(+) antiporter subunit B -
  ABKQ09_RS15695 (ABKQ09_15690) - 3128348..3128689 (+) 342 WP_003327160.1 Na(+)/H(+) antiporter subunit C -
  ABKQ09_RS15700 (ABKQ09_15695) - 3128682..3130163 (+) 1482 WP_268365636.1 Na+/H+ antiporter subunit D -
  ABKQ09_RS15705 (ABKQ09_15700) - 3130169..3130645 (+) 477 WP_003327158.1 Na+/H+ antiporter subunit E -
  ABKQ09_RS15710 (ABKQ09_15705) - 3130645..3130929 (+) 285 WP_003327157.1 Na(+)/H(+) antiporter subunit F1 -
  ABKQ09_RS15715 (ABKQ09_15710) mnhG 3130913..3131287 (+) 375 WP_003327156.1 monovalent cation/H(+) antiporter subunit G -
  ABKQ09_RS15720 (ABKQ09_15715) - 3131326..3131706 (-) 381 WP_371176080.1 hotdog fold thioesterase -
  ABKQ09_RS15725 (ABKQ09_15720) comA 3131724..3132365 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  ABKQ09_RS15730 (ABKQ09_15725) comP 3132446..3134740 (-) 2295 WP_268532909.1 histidine kinase Regulator
  ABKQ09_RS15735 (ABKQ09_15730) - 3134748..3134909 (-) 162 WP_061669362.1 competence pheromone ComX -
  ABKQ09_RS15740 (ABKQ09_15735) - 3134925..3135785 (-) 861 WP_061669434.1 polyprenyl synthetase family protein -
  ABKQ09_RS15745 (ABKQ09_15740) degQ 3135969..3136112 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  ABKQ09_RS15750 (ABKQ09_15745) - 3136572..3136931 (+) 360 WP_106033956.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23944.30 Da        Isoelectric Point: 4.7742

>NTDB_id=1035778 ABKQ09_RS15725 WP_003327154.1 3131724..3132365(-) (comA) [Bacillus atrophaeus strain F4]
MKKILVIDDHPAVMEGTKTILETDANLSVDCLSPDASEHFVHNHDFAAYDLILMDLNLGEINGMELSKKILKENPLCKII
VYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNDEILVDFSYFKQLVTHQKTKPAAASQNDQDVLTPRECLI
LQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1035778 ABKQ09_RS15725 WP_003327154.1 3131724..3132365(-) (comA) [Bacillus atrophaeus strain F4]
ATGAAAAAGATACTTGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTCTGGAAACAGATGCAAATCT
TTCTGTCGATTGTCTCAGTCCTGATGCCAGTGAACATTTTGTTCATAATCATGATTTTGCGGCTTATGATCTCATCTTAA
TGGATTTAAATCTAGGTGAAATCAACGGGATGGAGCTTTCTAAAAAGATTTTAAAAGAGAATCCTCTCTGCAAAATCATT
GTTTATACCGGCTATGAAGTGGAGGATTATTTTGAGGAGGCCATACGTGCGGGGCTGCACGGCGCGATCAGCAAGACCGA
ATCAAAAGAAAAGATTACGCAATACATATATCATGTGCTCAATGATGAAATTTTAGTTGATTTTTCTTATTTTAAACAGT
TGGTCACTCATCAAAAAACAAAACCTGCTGCCGCTTCGCAAAATGATCAAGATGTTCTGACGCCAAGAGAATGTCTCATT
CTTCAAGAGGTAGAAAAGGGATTTACCAATCAGGAAATAGCTGACGCGCTCCATCTGAGTAAGCGTTCGATTGAATACAG
CCTGACGTCCATTTTCAACAAACTGAACGTCGGTTCCCGGACGGAAGCGGTACTGATCGCAAAATCGGATGGCGTACTTT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

89.72

100

0.901

Multiple sequence alignment