Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABKQ09_RS12915 Genome accession   NZ_CP166870
Coordinates   2595327..2595950 (-) Length   207 a.a.
NCBI ID   WP_061669960.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2590327..2600950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS12885 (ABKQ09_12880) rpsT 2590621..2590887 (+) 267 WP_003325396.1 30S ribosomal protein S20 -
  ABKQ09_RS12890 (ABKQ09_12885) holA 2590902..2591945 (-) 1044 WP_010789253.1 DNA polymerase III subunit delta -
  ABKQ09_RS12895 (ABKQ09_12890) - 2591985..2592134 (-) 150 WP_010789254.1 hypothetical protein -
  ABKQ09_RS12900 (ABKQ09_12895) - 2592175..2592309 (+) 135 WP_003229983.1 YqzM family protein -
  ABKQ09_RS12905 (ABKQ09_12900) comEC 2592350..2594683 (-) 2334 WP_061669961.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABKQ09_RS12910 (ABKQ09_12905) - 2594690..2595259 (-) 570 WP_003325392.1 ComE operon protein 2 -
  ABKQ09_RS12915 (ABKQ09_12910) comEA 2595327..2595950 (-) 624 WP_061669960.1 helix-hairpin-helix domain-containing protein Machinery gene
  ABKQ09_RS12920 (ABKQ09_12915) comER 2596034..2596855 (+) 822 WP_010789257.1 late competence protein ComER -
  ABKQ09_RS12925 (ABKQ09_12920) - 2596925..2597665 (-) 741 WP_003325388.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  ABKQ09_RS12930 (ABKQ09_12925) rsfS 2597662..2598018 (-) 357 WP_003325387.1 ribosome silencing factor -
  ABKQ09_RS12935 (ABKQ09_12930) yqeK 2598035..2598595 (-) 561 WP_010789259.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ABKQ09_RS12940 (ABKQ09_12935) - 2598585..2599154 (-) 570 WP_003325385.1 nicotinate-nucleotide adenylyltransferase -
  ABKQ09_RS12945 (ABKQ09_12940) yhbY 2599166..2599456 (-) 291 WP_003325384.1 ribosome assembly RNA-binding protein YhbY -
  ABKQ09_RS12950 (ABKQ09_12945) aroE 2599450..2600292 (-) 843 WP_061669959.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 21962.75 Da        Isoelectric Point: 4.6181

>NTDB_id=1035768 ABKQ09_RS12915 WP_061669960.1 2595327..2595950(-) (comEA) [Bacillus atrophaeus strain F4]
MNWFYQHKKIILTAGGAVIFIVILLIFPGAKKQEPVQQITSSPDTAGTQVQQQESKGDADGEKIIIDIKGAVKHPGVYEL
KTGDRVSQAIEKAGGINSEADEKQVNLAELLQDGTVVYIPSEGEEPTQSAAANASVQNGAGKEALVNINTASLEELQAIS
GVGPSKAEAIIAYREENGKFQAVEDITNVSGIGEKSFEKIKSAITVK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1035768 ABKQ09_RS12915 WP_061669960.1 2595327..2595950(-) (comEA) [Bacillus atrophaeus strain F4]
ATGAATTGGTTTTACCAGCACAAAAAAATAATCTTAACGGCAGGTGGTGCTGTCATCTTCATCGTCATCCTGCTTATTTT
TCCCGGCGCAAAGAAGCAGGAGCCTGTTCAGCAAATCACATCGTCGCCTGACACGGCGGGCACACAAGTTCAGCAGCAAG
AATCGAAAGGTGATGCTGACGGAGAAAAAATTATCATTGATATTAAAGGCGCTGTCAAACATCCGGGTGTTTACGAATTG
AAAACGGGAGACAGAGTTTCGCAGGCTATCGAAAAAGCGGGAGGCATTAATTCAGAGGCTGATGAAAAACAAGTAAATTT
AGCTGAACTCCTGCAGGACGGCACTGTCGTGTACATTCCAAGTGAGGGGGAAGAGCCAACACAAAGCGCTGCCGCAAATG
CTTCTGTGCAAAACGGAGCAGGAAAAGAGGCTTTGGTTAATATCAATACAGCGTCATTAGAGGAACTGCAGGCTATTTCC
GGGGTCGGTCCGTCAAAAGCAGAAGCTATAATAGCTTATCGTGAAGAAAACGGAAAATTTCAAGCCGTTGAAGACATTAC
AAATGTCTCGGGAATCGGCGAAAAATCATTTGAGAAAATAAAATCAGCAATCACAGTTAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(143-205)

SLBB domain (SLBB)

(66-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

65.217

100

0.652

Multiple sequence alignment