Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ABKQ09_RS12905 Genome accession   NZ_CP166870
Coordinates   2592350..2594683 (-) Length   777 a.a.
NCBI ID   WP_061669961.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2587350..2599683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS12870 (ABKQ09_12865) - 2587681..2588019 (-) 339 WP_004429433.1 YqxA family protein -
  ABKQ09_RS12875 (ABKQ09_12870) spoIIP 2588038..2589246 (-) 1209 WP_061669962.1 stage II sporulation protein P -
  ABKQ09_RS12880 (ABKQ09_12875) gpr 2589313..2590416 (-) 1104 WP_003325397.1 GPR endopeptidase -
  ABKQ09_RS12885 (ABKQ09_12880) rpsT 2590621..2590887 (+) 267 WP_003325396.1 30S ribosomal protein S20 -
  ABKQ09_RS12890 (ABKQ09_12885) holA 2590902..2591945 (-) 1044 WP_010789253.1 DNA polymerase III subunit delta -
  ABKQ09_RS12895 (ABKQ09_12890) - 2591985..2592134 (-) 150 WP_010789254.1 hypothetical protein -
  ABKQ09_RS12900 (ABKQ09_12895) - 2592175..2592309 (+) 135 WP_003229983.1 YqzM family protein -
  ABKQ09_RS12905 (ABKQ09_12900) comEC 2592350..2594683 (-) 2334 WP_061669961.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABKQ09_RS12910 (ABKQ09_12905) - 2594690..2595259 (-) 570 WP_003325392.1 ComE operon protein 2 -
  ABKQ09_RS12915 (ABKQ09_12910) comEA 2595327..2595950 (-) 624 WP_061669960.1 helix-hairpin-helix domain-containing protein Machinery gene
  ABKQ09_RS12920 (ABKQ09_12915) comER 2596034..2596855 (+) 822 WP_010789257.1 late competence protein ComER -
  ABKQ09_RS12925 (ABKQ09_12920) - 2596925..2597665 (-) 741 WP_003325388.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  ABKQ09_RS12930 (ABKQ09_12925) rsfS 2597662..2598018 (-) 357 WP_003325387.1 ribosome silencing factor -
  ABKQ09_RS12935 (ABKQ09_12930) yqeK 2598035..2598595 (-) 561 WP_010789259.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ABKQ09_RS12940 (ABKQ09_12935) - 2598585..2599154 (-) 570 WP_003325385.1 nicotinate-nucleotide adenylyltransferase -
  ABKQ09_RS12945 (ABKQ09_12940) yhbY 2599166..2599456 (-) 291 WP_003325384.1 ribosome assembly RNA-binding protein YhbY -

Sequence

Protein


Download         Length: 777 a.a.        Molecular weight: 86952.87 Da        Isoelectric Point: 8.4705

>NTDB_id=1035766 ABKQ09_RS12905 WP_061669961.1 2592350..2594683(-) (comEC) [Bacillus atrophaeus strain F4]
MKNTRLLLPLAAASATAGIAAASFFSALLIFVLSLFFVYIKTKQLSLVFVSLSAFTIYFFLTSVIDSHNVSSYDIGTYKL
RAVIQEIPKIDGDRMSMVVRTPDGEKWASSYKMESLAEKEKLSQIEPGTACTFTGSLEKPKNATVPGTFDYKQYLYSQHI
HWNYSITAIQNCSTADGIQYRLLSVRKSLISFVNDHVPESSAGIVQALILGDRFYLMDDVLEAYQKLGVVHLLAISGLHV
GIVTAGIFYVLIRIGITREKAAILLLLFLPVYTILTGAAPSVMRAALMSGLYFIGSLWGKRMNPSIVICLSCLILLLFNP
YHLFQIGFQLSFAVSFSLILSSSIFKKLQSGGLVQLAMVSLIAQLGSLPILIYYFQQFSLISIPMNIIMVPFYTMFVMPF
SMIGFLLLSLSEPVGEYLFYWFDYIMCWSDKLIKYAADIEQFTVIAARPNALVLFGLIGSIVVLLTAMEKSALYQRLLSV
LLFIAMLFLVVIFPRLDPEGEVDMLDIGQGDSMFISAPYQRGHVMIDTGGILSYLTEPWREKRHPFSLSEKVLIPFLTAK
GIKQLDALILTHADQDHIGEAKVLIKRHKVKQLIVPKGFVSEPNDEKVLRTAQQEGIRITEVKRGDTFQIKDLQFRVLSP
ETPDLNSKNNSSLVLWMKTGHLSWVLTGDLEKEGEQEIMKAFPDLKADILKVGHHGSKGSTGEEFVRHLKPKAAIISAGE
DNRYHHPHQEVLDILKAHSVRIFRTDQSGTIQYRFKSGFGTFSVYPPYDTTGMTETN

Nucleotide


Download         Length: 2334 bp        

>NTDB_id=1035766 ABKQ09_RS12905 WP_061669961.1 2592350..2594683(-) (comEC) [Bacillus atrophaeus strain F4]
ATGAAGAACACACGCCTTCTTTTGCCTCTGGCGGCAGCATCAGCAACGGCTGGCATAGCTGCTGCCTCCTTTTTCTCCGC
ACTTCTCATATTCGTTTTATCACTCTTCTTTGTTTATATCAAAACAAAACAGCTCTCACTCGTTTTTGTTAGTTTATCGG
CTTTTACGATCTATTTTTTCTTAACCTCTGTTATCGATTCTCATAATGTATCGTCCTATGACATCGGCACTTATAAGCTT
CGGGCAGTGATTCAGGAAATTCCAAAGATTGACGGAGACCGTATGTCCATGGTAGTTCGAACGCCGGATGGGGAAAAGTG
GGCTTCATCATATAAAATGGAGTCGCTTGCTGAAAAGGAAAAACTTTCACAGATAGAGCCAGGGACGGCTTGTACGTTTA
CCGGTTCTTTAGAAAAGCCGAAAAACGCAACGGTTCCCGGCACTTTCGATTATAAACAGTATCTGTACAGCCAGCATATT
CACTGGAATTACTCGATAACAGCAATCCAAAATTGCAGCACGGCAGATGGAATACAGTATAGGCTTTTAAGCGTGAGAAA
GTCTCTTATTTCATTTGTGAATGACCATGTTCCGGAATCCTCAGCAGGCATCGTGCAGGCGCTCATCCTGGGTGACAGAT
TTTATCTTATGGACGATGTGCTGGAAGCGTATCAAAAGCTCGGAGTTGTCCATCTGCTTGCGATTTCAGGGCTTCATGTA
GGTATTGTGACAGCTGGTATATTCTATGTGCTCATTCGAATTGGGATAACGAGAGAGAAGGCTGCCATTCTGCTGCTGTT
GTTTTTGCCTGTTTATACGATTTTAACCGGAGCGGCTCCGTCTGTGATGCGCGCAGCTCTTATGTCAGGGCTTTATTTTA
TCGGCAGTTTGTGGGGAAAGCGTATGAACCCTTCAATAGTGATCTGTCTTTCTTGTTTAATTCTCCTTTTGTTTAATCCG
TATCATCTTTTTCAAATAGGGTTTCAGCTCTCATTTGCCGTAAGTTTCTCTTTAATACTTTCTTCCTCTATTTTCAAGAA
ACTTCAAAGCGGGGGACTCGTGCAGCTCGCCATGGTGTCACTCATCGCTCAGCTTGGATCGCTTCCCATCCTTATCTATT
ATTTTCAGCAGTTTTCTCTTATCAGTATACCGATGAATATCATTATGGTGCCTTTTTATACGATGTTTGTCATGCCGTTT
TCTATGATAGGTTTTCTTTTGTTAAGTTTGTCTGAGCCGGTCGGTGAGTACCTGTTTTATTGGTTTGATTACATCATGTG
CTGGAGTGACAAGCTGATAAAGTATGCTGCAGACATTGAGCAATTTACAGTGATTGCAGCCCGTCCAAATGCGCTTGTCT
TGTTTGGGCTGATTGGATCTATCGTTGTTTTGCTGACAGCCATGGAGAAATCCGCCCTTTACCAAAGACTTCTGTCTGTG
CTGCTCTTTATCGCAATGCTTTTTCTGGTGGTTATTTTTCCTCGCCTGGACCCCGAGGGAGAAGTGGATATGCTTGATAT
CGGTCAGGGAGACAGCATGTTTATCAGCGCTCCGTATCAGCGCGGCCATGTGATGATAGACACTGGAGGAATCCTTTCAT
ACTTAACAGAGCCATGGAGGGAAAAACGGCATCCTTTTTCGCTTAGCGAAAAGGTGCTCATTCCTTTCTTAACAGCAAAA
GGCATTAAACAGCTTGATGCCTTAATTTTGACTCATGCGGACCAAGACCATATAGGGGAAGCAAAGGTTCTGATCAAGCG
GCATAAAGTCAAACAGCTCATTGTGCCGAAAGGATTTGTTTCTGAACCGAATGATGAAAAAGTGCTGCGGACCGCACAGC
AAGAGGGAATTCGCATTACAGAGGTTAAACGAGGCGACACCTTTCAGATAAAGGATTTACAGTTTCGCGTACTGTCGCCT
GAGACTCCCGACCTGAACAGCAAAAATAACTCTTCTCTCGTGCTATGGATGAAAACAGGTCATCTTAGCTGGGTGCTGAC
AGGCGATCTCGAAAAGGAAGGGGAACAGGAGATCATGAAAGCTTTTCCGGATCTAAAAGCGGATATTTTAAAGGTGGGGC
ATCATGGCAGTAAAGGATCTACCGGAGAAGAGTTTGTCCGCCACCTGAAACCAAAGGCGGCAATTATTTCTGCCGGTGAG
GATAATCGGTATCACCATCCCCATCAGGAAGTCCTTGATATACTGAAAGCTCATTCTGTCCGCATTTTCCGCACTGATCA
AAGCGGGACGATCCAATACAGATTTAAAAGCGGGTTTGGAACCTTTTCTGTCTATCCTCCATATGATACAACAGGTATGA
CGGAGACGAACTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-467)

Domain of unknown function (DUF4131) (DUF4131)

(25-169)

Metallo-beta-lactamase superfamily (Lactamase_B)

(508-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Bacillus subtilis subsp. subtilis str. 168

65.508

100

0.655

Multiple sequence alignment