Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ABKQ09_RS12460 Genome accession   NZ_CP166870
Coordinates   2512364..2512804 (-) Length   146 a.a.
NCBI ID   WP_061670000.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2507364..2517804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS12410 (ABKQ09_12405) sinI 2507532..2507705 (+) 174 WP_003325442.1 anti-repressor SinI Regulator
  ABKQ09_RS12415 (ABKQ09_12410) sinR 2507739..2508074 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ABKQ09_RS12420 (ABKQ09_12415) tasA 2508265..2509047 (-) 783 WP_003325439.1 biofilm matrix protein TasA -
  ABKQ09_RS12425 (ABKQ09_12420) sipW 2509111..2509683 (-) 573 WP_010789195.1 signal peptidase I SipW -
  ABKQ09_RS12430 (ABKQ09_12425) tapA 2509667..2510368 (-) 702 WP_371175996.1 amyloid fiber anchoring/assembly protein TapA -
  ABKQ09_RS12435 (ABKQ09_12430) - 2510630..2510953 (+) 324 WP_003325436.1 DUF3889 domain-containing protein -
  ABKQ09_RS12440 (ABKQ09_12435) - 2511000..2511179 (-) 180 WP_003325435.1 YqzE family protein -
  ABKQ09_RS12445 (ABKQ09_12440) comGG 2511249..2511623 (-) 375 WP_061670002.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABKQ09_RS12450 (ABKQ09_12445) comGF 2511624..2512130 (-) 507 WP_326938418.1 competence type IV pilus minor pilin ComGF -
  ABKQ09_RS12455 (ABKQ09_12450) comGE 2512033..2512380 (-) 348 WP_003325432.1 competence type IV pilus minor pilin ComGE Machinery gene
  ABKQ09_RS12460 (ABKQ09_12455) comGD 2512364..2512804 (-) 441 WP_061670000.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABKQ09_RS12465 (ABKQ09_12460) comGC 2512794..2513093 (-) 300 WP_003325429.1 competence type IV pilus major pilin ComGC Machinery gene
  ABKQ09_RS12470 (ABKQ09_12465) comGB 2513108..2514145 (-) 1038 WP_268481127.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABKQ09_RS12475 (ABKQ09_12470) comGA 2514132..2515202 (-) 1071 WP_063638548.1 competence type IV pilus ATPase ComGA Machinery gene
  ABKQ09_RS12480 (ABKQ09_12475) - 2515619..2516572 (-) 954 WP_003325425.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16552.45 Da        Isoelectric Point: 9.0841

>NTDB_id=1035761 ABKQ09_RS12460 WP_061670000.1 2512364..2512804(-) (comGD) [Bacillus atrophaeus strain F4]
MKINIGGEKGFTLLESLLVLCLASVMLICVFTVIPPVYKNTSARQTVARLESDILLAQQTAISKHERVRIVFLSKEHKYQ
IIMGASIVERTYEDWIFIECATLADRLDFNEKGNPNLGGKIRLKTDRLTYEMTVYLGSGKINVERK

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1035761 ABKQ09_RS12460 WP_061670000.1 2512364..2512804(-) (comGD) [Bacillus atrophaeus strain F4]
TTGAAAATTAATATAGGCGGTGAGAAAGGGTTTACTCTTTTAGAAAGCTTGCTCGTTTTATGTCTGGCATCCGTTATGCT
GATTTGTGTTTTTACAGTCATACCTCCCGTATATAAAAATACATCTGCCCGCCAAACTGTTGCCAGGCTTGAAAGTGACA
TTCTCCTCGCTCAGCAGACTGCAATTTCTAAGCATGAGCGTGTGCGTATCGTGTTTTTGTCCAAGGAACATAAGTACCAG
ATCATTATGGGGGCTAGTATCGTTGAACGAACCTATGAGGATTGGATTTTCATTGAATGTGCAACATTGGCGGACCGTCT
TGATTTTAATGAAAAAGGAAATCCGAATTTGGGCGGGAAAATCAGGCTGAAAACAGATCGCCTCACATATGAAATGACTG
TCTACTTAGGGAGCGGAAAAATCAATGTGGAAAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

56.849

100

0.568

Multiple sequence alignment