Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | ABKQ09_RS12470 | Genome accession | NZ_CP166870 |
| Coordinates | 2513108..2514145 (-) | Length | 345 a.a. |
| NCBI ID | WP_268481127.1 | Uniprot ID | - |
| Organism | Bacillus atrophaeus strain F4 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2508108..2519145
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABKQ09_RS12420 (ABKQ09_12415) | tasA | 2508265..2509047 (-) | 783 | WP_003325439.1 | biofilm matrix protein TasA | - |
| ABKQ09_RS12425 (ABKQ09_12420) | sipW | 2509111..2509683 (-) | 573 | WP_010789195.1 | signal peptidase I SipW | - |
| ABKQ09_RS12430 (ABKQ09_12425) | tapA | 2509667..2510368 (-) | 702 | WP_371175996.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ABKQ09_RS12435 (ABKQ09_12430) | - | 2510630..2510953 (+) | 324 | WP_003325436.1 | DUF3889 domain-containing protein | - |
| ABKQ09_RS12440 (ABKQ09_12435) | - | 2511000..2511179 (-) | 180 | WP_003325435.1 | YqzE family protein | - |
| ABKQ09_RS12445 (ABKQ09_12440) | comGG | 2511249..2511623 (-) | 375 | WP_061670002.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| ABKQ09_RS12450 (ABKQ09_12445) | comGF | 2511624..2512130 (-) | 507 | WP_326938418.1 | competence type IV pilus minor pilin ComGF | - |
| ABKQ09_RS12455 (ABKQ09_12450) | comGE | 2512033..2512380 (-) | 348 | WP_003325432.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| ABKQ09_RS12460 (ABKQ09_12455) | comGD | 2512364..2512804 (-) | 441 | WP_061670000.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ABKQ09_RS12465 (ABKQ09_12460) | comGC | 2512794..2513093 (-) | 300 | WP_003325429.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ABKQ09_RS12470 (ABKQ09_12465) | comGB | 2513108..2514145 (-) | 1038 | WP_268481127.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ABKQ09_RS12475 (ABKQ09_12470) | comGA | 2514132..2515202 (-) | 1071 | WP_063638548.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ABKQ09_RS12480 (ABKQ09_12475) | - | 2515619..2516572 (-) | 954 | WP_003325425.1 | magnesium transporter CorA family protein | - |
| ABKQ09_RS12485 (ABKQ09_12480) | - | 2516694..2518042 (+) | 1349 | Protein_2419 | hemolysin family protein | - |
| ABKQ09_RS12490 (ABKQ09_12485) | - | 2518118..2518969 (-) | 852 | WP_371175997.1 | STAS domain-containing protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 40098.31 Da Isoelectric Point: 9.7517
>NTDB_id=1035763 ABKQ09_RS12470 WP_268481127.1 2513108..2514145(-) (comGB) [Bacillus atrophaeus strain F4]
MKRIKKSWPINDQANLLNRLGDMTENGYNLLDGLRLMELQMNKRQRTEMSAAVNRLREGEPFYQVLQALAFHKEAVSICY
LAEMHGELSVAMRQSGGLLERKLTQANQLKKVIRYPIFLIFTVFVMFYILQAVIIPQFSGVYQSMNMETSRTTAVIFAFF
QHVHYAVIGFVLLALGAALYYWFGFKKKSPADKMLFFVRIPILGRLVILFNSYFFSLQLSSLLKSGLSIYDSLKAFKEQS
FLPFYRQEAEQIINKLRAGESIDRALYKHPCYENDFCEVVLHGQLSGQLHRELFTYSQFLMDRLERKVEKWTGILQPVIY
GIVAGMILIVYLSMLLPMYQMMNQL
MKRIKKSWPINDQANLLNRLGDMTENGYNLLDGLRLMELQMNKRQRTEMSAAVNRLREGEPFYQVLQALAFHKEAVSICY
LAEMHGELSVAMRQSGGLLERKLTQANQLKKVIRYPIFLIFTVFVMFYILQAVIIPQFSGVYQSMNMETSRTTAVIFAFF
QHVHYAVIGFVLLALGAALYYWFGFKKKSPADKMLFFVRIPILGRLVILFNSYFFSLQLSSLLKSGLSIYDSLKAFKEQS
FLPFYRQEAEQIINKLRAGESIDRALYKHPCYENDFCEVVLHGQLSGQLHRELFTYSQFLMDRLERKVEKWTGILQPVIY
GIVAGMILIVYLSMLLPMYQMMNQL
Nucleotide
Download Length: 1038 bp
>NTDB_id=1035763 ABKQ09_RS12470 WP_268481127.1 2513108..2514145(-) (comGB) [Bacillus atrophaeus strain F4]
ATGAAGAGGATTAAAAAAAGCTGGCCGATAAACGATCAAGCTAATTTGCTAAACAGACTCGGTGACATGACAGAAAACGG
ATACAATCTTCTGGATGGATTACGGTTAATGGAACTGCAAATGAATAAGCGTCAGCGTACGGAAATGTCTGCTGCTGTAA
ATCGTTTACGAGAGGGTGAGCCATTCTATCAGGTTTTGCAGGCTTTGGCTTTCCACAAGGAAGCCGTAAGCATTTGTTAT
TTAGCAGAAATGCATGGAGAATTGTCCGTTGCTATGAGGCAAAGCGGAGGGCTGTTGGAAAGGAAATTAACACAGGCCAA
TCAGCTGAAAAAGGTCATCCGTTATCCGATTTTCCTGATCTTCACTGTCTTTGTGATGTTTTATATCCTGCAAGCTGTCA
TTATCCCGCAATTTTCAGGAGTTTATCAGTCCATGAATATGGAAACCTCACGCACAACCGCTGTTATATTCGCTTTTTTT
CAGCACGTTCATTATGCAGTGATTGGTTTTGTCTTGCTTGCTCTCGGAGCGGCACTCTATTACTGGTTTGGATTTAAGAA
GAAGTCCCCGGCAGACAAAATGCTCTTTTTTGTACGAATACCCATACTCGGAAGACTTGTCATTTTATTTAACAGCTACT
TTTTTTCTTTGCAGCTCAGCAGCCTATTAAAGTCTGGACTGTCTATTTACGACAGCCTTAAGGCCTTTAAAGAGCAATCG
TTCCTCCCTTTTTACCGTCAGGAGGCAGAACAAATCATTAACAAATTAAGGGCTGGAGAGTCCATAGATAGAGCTCTGTA
TAAACACCCATGCTATGAAAATGACTTTTGTGAAGTGGTGCTGCACGGCCAATTAAGCGGGCAGCTGCATCGTGAACTAT
TCACCTACAGCCAGTTTTTAATGGACCGGCTGGAGCGAAAGGTTGAAAAATGGACGGGAATCCTTCAGCCCGTCATCTAC
GGTATTGTTGCCGGAATGATTTTAATTGTGTATTTGTCGATGCTTTTGCCTATGTATCAGATGATGAATCAATTGTAG
ATGAAGAGGATTAAAAAAAGCTGGCCGATAAACGATCAAGCTAATTTGCTAAACAGACTCGGTGACATGACAGAAAACGG
ATACAATCTTCTGGATGGATTACGGTTAATGGAACTGCAAATGAATAAGCGTCAGCGTACGGAAATGTCTGCTGCTGTAA
ATCGTTTACGAGAGGGTGAGCCATTCTATCAGGTTTTGCAGGCTTTGGCTTTCCACAAGGAAGCCGTAAGCATTTGTTAT
TTAGCAGAAATGCATGGAGAATTGTCCGTTGCTATGAGGCAAAGCGGAGGGCTGTTGGAAAGGAAATTAACACAGGCCAA
TCAGCTGAAAAAGGTCATCCGTTATCCGATTTTCCTGATCTTCACTGTCTTTGTGATGTTTTATATCCTGCAAGCTGTCA
TTATCCCGCAATTTTCAGGAGTTTATCAGTCCATGAATATGGAAACCTCACGCACAACCGCTGTTATATTCGCTTTTTTT
CAGCACGTTCATTATGCAGTGATTGGTTTTGTCTTGCTTGCTCTCGGAGCGGCACTCTATTACTGGTTTGGATTTAAGAA
GAAGTCCCCGGCAGACAAAATGCTCTTTTTTGTACGAATACCCATACTCGGAAGACTTGTCATTTTATTTAACAGCTACT
TTTTTTCTTTGCAGCTCAGCAGCCTATTAAAGTCTGGACTGTCTATTTACGACAGCCTTAAGGCCTTTAAAGAGCAATCG
TTCCTCCCTTTTTACCGTCAGGAGGCAGAACAAATCATTAACAAATTAAGGGCTGGAGAGTCCATAGATAGAGCTCTGTA
TAAACACCCATGCTATGAAAATGACTTTTGTGAAGTGGTGCTGCACGGCCAATTAAGCGGGCAGCTGCATCGTGAACTAT
TCACCTACAGCCAGTTTTTAATGGACCGGCTGGAGCGAAAGGTTGAAAAATGGACGGGAATCCTTCAGCCCGTCATCTAC
GGTATTGTTGCCGGAATGATTTTAATTGTGTATTTGTCGATGCTTTTGCCTATGTATCAGATGATGAATCAATTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
69.35 |
93.623 |
0.649 |