Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ABKQ09_RS02210 Genome accession   NZ_CP166870
Coordinates   451335..452285 (+) Length   316 a.a.
NCBI ID   WP_010789705.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446335..457285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS02180 (ABKQ09_02180) - 447223..447432 (+) 210 Protein_396 ATP-binding protein -
  ABKQ09_RS02185 (ABKQ09_02185) rapC 447627..448775 (+) 1149 WP_061669569.1 Rap family tetratricopeptide repeat protein Regulator
  ABKQ09_RS02190 (ABKQ09_02190) phrC 448759..448878 (+) 120 WP_004430266.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  ABKQ09_RS02195 (ABKQ09_02195) - 449013..449120 (-) 108 WP_072053240.1 YjcZ family sporulation protein -
  ABKQ09_RS02200 (ABKQ09_02200) - 449324..449407 (-) 84 WP_371176570.1 YjcZ family sporulation protein -
  ABKQ09_RS02205 (ABKQ09_02205) - 449538..450902 (-) 1365 WP_061669570.1 aspartate kinase -
  ABKQ09_RS02210 (ABKQ09_02210) ceuB 451335..452285 (+) 951 WP_010789705.1 ABC transporter permease Machinery gene
  ABKQ09_RS02215 (ABKQ09_02215) - 452278..453225 (+) 948 WP_004430269.1 iron chelate uptake ABC transporter family permease subunit -
  ABKQ09_RS02220 (ABKQ09_02220) - 453219..453977 (+) 759 WP_371176307.1 ABC transporter ATP-binding protein -
  ABKQ09_RS02225 (ABKQ09_02225) - 453999..454952 (+) 954 WP_371176308.1 siderophore ABC transporter substrate-binding protein -
  ABKQ09_RS02230 (ABKQ09_02230) - 455243..456661 (-) 1419 WP_371176309.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34967.50 Da        Isoelectric Point: 9.8731

>NTDB_id=1035727 ABKQ09_RS02210 WP_010789705.1 451335..452285(+) (ceuB) [Bacillus atrophaeus strain F4]
MKLRYLVVLLILLAFCSIFIGVEDLSPLDLFHMNKEEASTLFASRLPRLISIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLIKMLIAFIFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNISSWLQGDFSLIVKGRYELLFLSIPLVIIAYVFADKFTVAGMGESFSVNLGLKYKRIVNIGLIISSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTALLGAVFVLLCDILGRIIIFPYEISIGLMVGIIGSGIFLYMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1035727 ABKQ09_RS02210 WP_010789705.1 451335..452285(+) (ceuB) [Bacillus atrophaeus strain F4]
ATGAAGCTACGTTACTTAGTTGTTTTACTTATTTTACTTGCATTCTGTTCTATTTTTATCGGCGTAGAGGATCTGTCGCC
GCTGGATCTTTTTCATATGAATAAAGAAGAGGCGTCAACGCTTTTCGCCAGCCGTTTACCGAGATTAATCAGCATTATTA
TTGCAGGCATGAGCTTGAGCATCTGCGGTTTAATTATGCAGCAGATCAGCCGGAATAAATTCGTTTCGCCGACAACTGCC
GGCACGATGGATTGGGCGAGGCTCGGGATTTTGATTTCATTAATGCTGTTTACCTCTGCCAGTCCGCTGATAAAAATGCT
GATTGCTTTTATATTTGCGCTTGCGGGCAACTTCCTGTTCATGAAAATCCTTGAGAGAATAAAGTTTAATGATACGATCT
TTATTCCTCTCGTGGGCTTAATGCTTGGGAACATTGTCAGCTCGATTGCGACGTTTATCGCGTATAAATATGATTTAATC
CAAAATATTTCTTCATGGCTTCAAGGAGACTTCTCTCTCATTGTGAAAGGGAGATATGAACTTTTATTCTTGAGTATCCC
GCTTGTGATAATTGCATATGTATTTGCTGACAAATTCACAGTAGCAGGGATGGGGGAAAGCTTCTCCGTCAACCTTGGCC
TGAAATATAAACGGATTGTGAATATCGGGCTGATTATATCGTCGCTGATCACGTCCCTCGTGATTTTGACTGTCGGTATG
CTGCCGTTCCTTGGGCTAATCATTCCGAATATCGTATCCATTTACAGGGGAGACAACCTGAAAAGCAGCCTGCCACACAC
AGCTCTTTTAGGCGCCGTTTTTGTGCTGCTTTGCGATATATTGGGCAGGATTATCATTTTTCCGTACGAAATCTCGATTG
GCTTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTATATGTTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525

Multiple sequence alignment